New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1571288	NA (NA)	14 (0.160)	8/172	NT	20.3%	coding (758/1401 nt)	gadB	glutamate decarboxylase B, PLP‑dependent
	?	NC_000913	= 1571318	57 (0.620)					coding (728/1401 nt)	gadB	glutamate decarboxylase B, PLP‑dependent

TTTATGGCCTGAAGCACTGATCGATTTCACACGCGGCAGGCGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAATTTATCCAGCGCATCGTGCAGCGGTTGTG  >  NC_000913/1571218‑1571387                                                                       |                                                                                                    tttATGGCCTGAAGCACTGATCGATTTCACACGCGGCAGGCGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCG                                                                        >  2:155327‑M2/1‑100 (MQ=255) tttATGGCCTGAAGCACTGATCGATTTCACACGCGGCAGGCGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCG                                                                        >  1:1956681‑M2/1‑100 (MQ=255)    aTGGCCTGAAGCACTGATCGATTTCACACGCGGCAGGCGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGT                                                                       <  1:1958221‑M2/98‑1 (MQ=255)                   gATCGATTTCACACGCGGCAGGCGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTtcgtcgccccggatatc                                                      <  2:2256297‑M2/100‑18 (MQ=255)                                cgcgGCAGGCGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCACCGTtcgtcgccccggatatcgtctgggacttcc                                         <  1:779436‑M2/100‑31 (MQ=255)                                   ggCAGGCGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCgg                                      >  2:1155855/1‑100 (MQ=33)                                   ggCAGGCGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCgg                                      <  1:1565196/100‑1 (MQ=32)                                     cAGGCGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGcc                                    >  2:2336360/1‑100 (MQ=33)                                       ggCGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTg                                  >  1:441346/1‑100 (MQ=32)                                       ggCGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTg                                  <  2:1341538/100‑1 (MQ=33)                                       ggCGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTg                                  >  1:2442007/1‑100 (MQ=33)                                       ggCGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTg                                  <  1:1473715/100‑1 (MQ=33)                                        gCGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTgg                                 <  2:949597/100‑1 (MQ=33)                                         cGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGa                                >  2:62266/1‑100 (MQ=33)                                          ggAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGaa                               >  2:1970479/1‑100 (MQ=33)                                           gAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAAt                              <  2:1221486/100‑1 (MQ=33)                                            aaGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAAtt                             <  2:2499003/100‑1 (MQ=33)                                             aGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAAttt                            >  1:2496863/1‑100 (MQ=33)                                             aGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAAttt                            <  2:670853/100‑1 (MQ=33)                                              gTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAATTTa                           >  1:1231010/1‑100 (MQ=32)                                                cccAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAATTTATc                         >  1:729338/1‑100 (MQ=33)                                                cccAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAATTTATc                         >  1:58278/1‑100 (MQ=33)                                                cccAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAATTTATc                         >  2:2093172/1‑100 (MQ=33)                                                 ccAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAATTTATcc                        <  2:1419582/100‑1 (MQ=33)                                                 ccAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAATTTATcc                        <  1:2011756/100‑1 (MQ=33)                                                 ccAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGGATCGGCCTGGAATTTATcc                        <  1:2490785/100‑1 (MQ=17)                                                   aGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAATTTATCCAg                      >  1:428931/1‑100 (MQ=32)                                                   aGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAATTTATCCAg                      <  1:1957320/100‑1 (MQ=33)                                                    gACGATAACCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAATTTATCCAgc                     <  2:1679997/100‑1 (MQ=17)                                                      cGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAATTTATCCAgcgc                   >  1:2542878/1‑100 (MQ=32)                                                               gggCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTtcgtcgccccggatatcgtctgggacttccgcctgccgcgtgtgaaatcgatcagtgcttc          <  1:1718132‑M2/100‑62 (MQ=255)                                                                  cgacgaACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAATTTATCCAGCGCATCGTGCAGCgg       <  1:2107558/100‑1 (MQ=33)                                                                   nacgaaCGGTGCCAGGAAGCCACCGCTGGCAGCGTtcgtcgccccggatatcgtctgggacttccgcctgccgcgtgtgtaatcgatcagtgcttcaggc      <  1:259635‑M2/99‑66 (MQ=255)                                                                    acggacggTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAATTTATCCAGCGCATCGTGCAGCGGt      <  1:699188/99‑1 (MQ=17)                                                                    acgaACGGTGCCAGGAAGCCACCGCTGGCAGCGTtcgtcgccccggatatcgtctgggacttccgcctgccgcgtgtgaaatcgatcagtgcttcaggcc     <  2:1613213‑M2/100‑67 (MQ=255)                                                                    acgaACGGTGCCAGGAAGCCACCGCTGGCAGCGTtcgtcgccccggatatcgtctgggacttccgcctgccgcgtgtgaaatcgatcagtgcttcaggcc     <  1:1692284‑M2/100‑67 (MQ=255)                                                                     cgaACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAATTTATCCAGCGCATCGTGCAGCgg       >  1:1326729/1‑97 (MQ=33)                                                                      gaACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCAGGTCGATGTCGATACCGGTATCGGCCTGGAATTTATCCAGCGCATCGTGCAGCGGTtg    <  2:1371231/99‑1 (MQ=18)                                                                       aaCGGTGCCAGGAAGCCACCGCTGGCAGCGTtcgtcgccccggatatcgtctgggacttccgcctgccgcgtgtgaaatcgatcagtgcttcaggccata  <  1:1873431‑M2/100‑70 (MQ=255)                                                                       aaCGGTGCCAGGAAGCCACCGCTGGCAGCGTtcgtcgccccggatatcgtctgggacttccgcctgccgcgtgtgaaatcgatcagtgcttcaggccata  <  2:2589912‑M2/100‑70 (MQ=255)                                                                       aaCGGTGCCAGGAAGCCACCGCTGGCACCGTtcgtcgccccggatatcgtctgggacttccgcctgccgcgtgtgaaatcgatcagtgcttcaggccata  <  2:1536759‑M2/100‑70 (MQ=255)                                                                       aaCGGTGCCAGGAAGCCACCGCTGGCACCGTtcgtcgccccggatatcgtctgggacttccgcctgccgcgtgtgaaatcgatcagtgcttcaggccata  <  1:1041535‑M2/100‑70 (MQ=255)                                                                       |                                                                                                    TTTATGGCCTGAAGCACTGATCGATTTCACACGCGGCAGGCGGAAGTCCCAGACGATATCCGGGGCGACGAACGGTGCCAGGAAGCCACCGCTGGCAGCGTCGATGTGCATGTCGATGTCGATACCGGTATCGGCCTGGAATTTATCCAGCGCATCGTGCAGCGGTTGTG  >  NC_000913/1571218‑1571387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.