| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3471115 | 24 (0.260) | 8 (0.090) | 8/168 | NT | 19.6% | coding (215/1185 nt) | tufA | translation elongation factor EF‑Tu 1 |
| ? | NC_000913 | 4176196 = | 43 (0.500) | coding (253/1185 nt) | tufB | translation elongation factor EF‑Tu 2 | |||||
ACCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGAGCAGCACCGCCGTAGG > NC_000913/3471016‑3471214 | aCCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGG < 1:775963‑M1/100‑1 (MQ=255)aCCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGG < 2:2062755‑M1/100‑1 (MQ=255) ccAGGATCGCGCCTTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGG < 2:2139885‑M1/99‑1 (MQ=255) ccAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGgt > 2:1665770/1‑100 (MQ=33) ggATCGCGCCGTCCATCTGAGCAGCACCGGTTATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGTGTCGGGGTGTc < 1:107326/100‑1 (MQ=12) ggATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTc > 2:1411043/1‑100 (MQ=33) ggATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTc > 1:1265755/1‑100 (MQ=33) gATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCg < 1:922641/100‑1 (MQ=32) gATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTCAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTCGTGATGGGTCGGGgtg > 1:1022589/1‑97 (MQ=255) aTCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCg > 1:421852/1‑99 (MQ=33) tCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTa < 1:119386/100‑1 (MQ=33) ccGTGCATCTGAGCAGCACCGGTGATCATTTTTTTAACATAGTCGGCGGGCCCGGGGCAGTCTACGTGTTGGTAGTGACGTGTCGGGGTGTCGTATTCa < 1:756625/99‑1 (MQ=11) cGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAAc < 2:2429398/100‑1 (MQ=33) cGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACAAAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAAc < 1:1771076/100‑1 (MQ=18) ccATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTg > 2:1633681/1‑100 (MQ=33) cATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTga > 2:295686/1‑100 (MQ=33) cATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTga > 1:1059111/1‑100 (MQ=33) cATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTg > 2:17111/1‑99 (MQ=33) aTCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTgag < 2:1306909/100‑1 (MQ=32) aTCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTgag < 1:207141/100‑1 (MQ=32) aTCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTgag < 2:505177/100‑1 (MQ=33) cTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGaa > 2:1521307/1‑100 (MQ=32) tGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAg > 1:2553503/1‑100 (MQ=32) tGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAg < 1:241399/100‑1 (MQ=32) tGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAg < 2:593588/100‑1 (MQ=32) tGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAg > 1:1183187/1‑100 (MQ=32) ggCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGcacgccgactatgttaaaaacatcatcaccggtgctgcgcagatggacggcgc > 1:956144‑M1/1‑44 (MQ=255) gCGTGCCCCGGGCAGTCTACGTGTGCGTAGGGACGGGACGGGGcacgccgactatctgaaaaacatgagcaccggtgctccgcagatggacggcccgatc > 1:1389442‑M1/1‑43 (MQ=255) cGTGCCCCGGGCAGTCTACGTGTGCGTAGTGA‑‑‑‑‑CGGGGcacgccgactatgttaaaaacatgatcaccggtgctgcgcagatggacggcgcgatcctggt > 2:1942436‑M1/1‑37 (MQ=255) tGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGcacgccgactatgttaaaaacatgatcaccggtgctgcgcagatggacggcgcgatcctg > 1:337805‑M1/1‑40 (MQ=255) gCCCCGGGCAGTCTACGTGTGCGTA‑‑GACTGCCCGGGGcacgccgactatgttaaaaacatgatcaccggtgctgcgcagatggacggcgcgatcctgtta > 1:762117‑M1/1‑37 (MQ=255) ggCAGTCTACGTGTGCGTA‑‑GACTGCCCGGGGcacgccgactatgttaaaaacatgatcaccggtgctgcgcagatggacggcgcgatcctggtagttgc > 1:2068424‑M1/1‑31 (MQ=255) cAGTCTACGTGTGCGTA‑‑GACTGCCCGGGGcacgccgactatgttaaaaacatgatcaccggtgctgcgcagatggacggcgcgatcctggtagttgctgc > 2:1386432‑M1/1‑29 (MQ=255) tgtgCGTAGTGACGGGTCGGGGcacgccgactatgttaaaaacatgatcaccggtgctgcgcagatggacggcgcgatcctggtagttgctgcgactgac > 2:801060‑M1/1‑22 (MQ=255) tgCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCa < 1:1038134/100‑1 (MQ=11) tgCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCa < 2:1812945/100‑1 (MQ=11) gCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCAc > 2:489852/1‑100 (MQ=31) gTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGa > 2:659406/1‑100 (MQ=33) aGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGagc < 1:1045969/100‑1 (MQ=32) gACGGGTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTTTTCTGGCTTGTTATCGATCTGGTCGAATGCACGagcagc > 1:2008441/1‑100 (MQ=11) aCGGGTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGAgcagca < 2:1015998/100‑1 (MQ=33) ggTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGAGCAGCAccg > 2:337545/1‑100 (MQ=33) ggggTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGAGCAGCACCGCCGt > 2:184042/1‑100 (MQ=33) gggTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGAGCAGCACCGCCGTa > 1:1349028/1‑100 (MQ=33) gggTGTCGTACTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGAGCAGCACCGCCGTa < 1:1698153/100‑1 (MQ=18) ggcacgccgactatgttaaaaacatgatcaccggtgctgggcagatggacggcgcgatcctggtagttgctgcgactgacggcccgatgccgcagacacg < 1:2458861‑M1/100‑99 (MQ=255) ggcacgccgactatgttaaaaacatgatcaccggtgctgcgcagatggacggcgcgatcctggtagttgctgcgactgacggcccgatgccgcagactcg < 1:704936‑M1/100‑99 (MQ=255) ggTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGAGCAGCACCGCCGTAg < 2:1265759/100‑1 (MQ=33) gtgtCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGAGCAGCACCGCCGTAgg > 1:1861144/1‑100 (MQ=32) gtgtCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGAGCAGCACCGCCGTAgg < 1:1303178/100‑1 (MQ=32) gcacgccgactatgttaaaaacatgatcaccggtgctgcgcagatggacggcgcgatcctggtagttgctgcgactgacggcccgatgccgcagactcgt < 2:1397661‑M1/100‑100 (MQ=255) gcacgccgactatgttaaaaacatgatcaccggtgctgcgcagatggacggcgcgatcctggtagttgctgcgactgacggcccgatgccgcagactcgt > 2:67369‑M1/1‑1 (MQ=255) | ACCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGAGCAGCACCGCCGTAGG > NC_000913/3471016‑3471214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |