| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4168341 | 12 (0.130) | 9 (0.110) | 7/158 | NT | 45.8% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | NA (NA) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
GATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGG > NC_000913/4168242‑4168440 | gATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTTGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAAT < 1:524981‑M1/100‑1 (MQ=255)gATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAAT > 1:264146‑M1/1‑100 (MQ=255)gATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAAT > 2:1972313‑M1/1‑100 (MQ=255) tAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAATGGCATGCGCTTGCTATTAATGAAAGATCACCCTACACGAAAatat > 1:968538/1‑100 (MQ=11) tAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAatat > 1:960185/1‑100 (MQ=35) aGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATc < 1:1399460/100‑1 (MQ=35) aGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTATATTAATGAAAGCTCACCCTACACGAAAATATc > 2:408274/1‑100 (MQ=25) gAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCa < 1:348201/100‑1 (MQ=33) aaaGTGAAAAGCAAGGCGTTTACGCGTTGGTAGTGAGGCTGAAGAAAATAACACCGGTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATcn < 1:976965/99‑2 (MQ=11) aaaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCAc > 1:227570/1‑100 (MQ=33) aaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACg < 2:723527/100‑1 (MQ=33) gTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGCATAAGGCCGTTCGCGTTCTATTAATGAAAGCTCACCCTACACGAACatacc > 1:2077397/1‑93 (MQ=11) gTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCa > 1:748973/1‑100 (MQ=33) gTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCa > 1:1319782/1‑100 (MQ=32) gTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGATTCCTATTAGTGAAAGCTCACCCTACACGAAAATATCACGCa > 1:1815819/1‑100 (MQ=255) tGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCaa > 1:2443065/1‑100 (MQ=32) gAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTTAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAc > 2:1223265/1‑100 (MQ=17) aaaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAcg < 2:604743/100‑1 (MQ=32) aaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAcgc > 1:49179/1‑100 (MQ=31) aaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAcgc > 1:264005/1‑100 (MQ=31) gagcttggggTTTACGTGTTTGGTGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAcgcg > 1:1024698/10‑100 (MQ=1) aaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAcgcg < 2:2444777/100‑1 (MQ=11) ggCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCGTTGCGTGATat < 2:1582437/100‑2 (MQ=1) ttACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAAatcacgcgttgcgtgatattttcg < 2:1579756‑M1/100‑25 (MQ=255) ttACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAAatcacgcgttgcgtgatattttcg < 1:1612712‑M1/100‑25 (MQ=255) gTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACTCTACACGAAAAatcacgcgttgcgtgatattttcgtgtagg < 2:1616812‑M1/100‑31 (MQ=255) ggAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtag < 1:2194158‑M1/100‑35 (MQ=255) gAGTGATGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTGATGATAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgta < 1:2144565‑M1/98‑34 (MQ=255) gAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagg < 1:2505461‑M1/100‑36 (MQ=255) aGTGAGGCTGAAGAGAATAAGGCCGTACGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtaggg < 1:1024876‑M1/100‑37 (MQ=255) gAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCGACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttc < 1:107620‑M1/100‑46 (MQ=255) gtccgtTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaa < 1:132404‑M1/98‑57 (MQ=255) gccacgaAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgcaaggccttattctcttcagcctcactccc > 1:1541515‑M1/3‑11 (MQ=255) nacgAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagccacactcccaa > 1:1195612‑M1/2‑9 (MQ=255) cacGAAGATtgcttatcacgctttgcgtgatattttcgtgtagagtgtgctttcattaatagaaagcgaacggccttattctcttcagcctcactccc < 1:125592‑M1/98‑90 (MQ=255) cacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaa > 2:2398226‑M1/1‑9 (MQ=255) cacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaa > 1:682341‑M1/1‑9 (MQ=255) cacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaa > 1:1031359‑M1/1‑9 (MQ=255) acGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaac < 2:665503‑M1/100‑93 (MQ=255) cGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacg < 2:1232144‑M1/100‑94 (MQ=255) cGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacg < 2:1037025‑M1/100‑94 (MQ=255) cGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacg < 1:812584‑M1/100‑94 (MQ=255) cGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacg > 2:390201‑M1/1‑7 (MQ=255) cGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacg > 1:1272813‑M1/1‑7 (MQ=255) cGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacg > 2:946444‑M1/1‑7 (MQ=255) gAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgc > 1:2347596‑M1/1‑6 (MQ=255) aaaaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcg > 2:1479648‑M1/1‑5 (MQ=255) aaaaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcg > 2:2039395‑M1/1‑5 (MQ=255) aaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgta < 2:1583855‑M1/100‑98 (MQ=255) aTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaac > 1:1157319‑M1/1‑2 (MQ=255) ttgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaa < 2:274255‑M1/100‑100 (MQ=255) ttgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaa > 2:590734‑M1/1‑1 (MQ=255) ttgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaa > 2:891007‑M1/1‑1 (MQ=255) | GATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGG > NC_000913/4168242‑4168440 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |