New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4317917 =NA (NA)14 (0.170) 5/164 NT NA noncoding (1/83 nt) REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4317949 = NA (NA)noncoding (33/83 nt) REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 198 total aligned reads displayed.

GCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCA  >  NC_000913/4317818‑4318016
                                                                                                   |                                                                                                   
ccgatctcacagctgctggtgtcatcggttttgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagg                                                                                                     >  1:1251005‑M1/100‑100 (MQ=255)
 cgATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGgtg                                                                                                     >  2:2239954/1‑99 (MQ=255)
  gtatacacagctgctggtgtcatcggttttgcagaattgagccggtgccggatgcggcgtaaaggccttatccggcctacaaatgcgctccccgtagGTc                                                                                                   <  2:2467572‑M1/3‑1 (MQ=255)
   aTTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCg                                                                                                  <  2:407569/100‑1 (MQ=255)
   aTTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCg                                                                                                  >  1:1567240/1‑100 (MQ=255)
    ttacacagctgctggtgtcatcggttttgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCgg                                                                                                 >  2:651935‑M1/96‑100 (MQ=255)
    ttGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCgg                                                                                                 <  1:2429737/100‑1 (MQ=255)
    ttGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCgg                                                                                                 <  2:577437/100‑1 (MQ=255)
     tacacagctgctggtgtcatcggttttgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGa                                                                                                <  1:651932‑M1/6‑1 (MQ=255)
      gAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGAt                                                                                               >  2:139350/1‑100 (MQ=255)
      gAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGAt                                                                                               >  2:2023761/1‑100 (MQ=255)
       cacagctgctggtgtcatcggttttgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtaggagatcgg                                                                                              <  2:1251009‑M1/8‑8 (MQ=255)
       cacagctgctggtgtcatcggttttgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGAt                                                                                               <  1:1032532‑M1/7‑1 (MQ=255)
       aGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATg                                                                                              >  2:1910663/1‑100 (MQ=255)
         cagctgctggtgtcatcggttttgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGtcgca                                                                                                <  1:1456785‑M1/6‑3 (MQ=255)
           cGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCACCTCGTGGTTCGGGTGTCGGATGCGAc                                                                                          >  1:2296915/1‑100 (MQ=255)
             ggCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGc                                                                                        <  2:1433810/100‑1 (MQ=255)
             ggCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGATTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACg                                                                                         >  2:1370453/1‑99 (MQ=255)
              gCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCt                                                                                       >  2:1414161/1‑100 (MQ=255)
                 ggCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGAc                                                                                    <  2:1741847/100‑1 (MQ=255)
                 ggCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGAc                                                                                    >  1:985016/1‑100 (MQ=255)
                  gcgcACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGAcg                                                                                   <  1:2167423/100‑1 (MQ=255)
                  gcgcACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGAcg                                                                                   <  2:351382/100‑1 (MQ=255)
                  gcgcACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGAcg                                                                                   <  2:388615/100‑1 (MQ=255)
                   cgcACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGAcgc                                                                                  >  2:2073123/1‑100 (MQ=255)
                    gcACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGAcgcg                                                                                 >  2:632618/1‑100 (MQ=255)
                    gcACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGAcgcg                                                                                 >  2:1990438/1‑100 (MQ=255)
                      aCGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTc                                                                               <  2:1636851/100‑1 (MQ=255)
                      aCGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTc                                                                               <  2:300586/100‑1 (MQ=255)
                       cGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCt                                                                              >  2:1436235/1‑100 (MQ=255)
                        gCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCtt                                                                             >  2:2274342/1‑100 (MQ=255)
                           gttttgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGATGCGACGCTGACGCGTCTTATc                                                                          >  1:2555108‑M1/73‑100 (MQ=255)
                           gTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATc                                                                          <  2:872033/100‑1 (MQ=255)
                           gTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATc                                                                          <  2:913466/100‑1 (MQ=255)
                            ttttgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGATGCGACGCTGACGCGTCTTATcc                                                                         >  2:1939278‑M1/72‑100 (MQ=255)
                            ttttgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGATGCGACGCTGACGCGTCTTATcc                                                                         >  2:1603671‑M1/72‑100 (MQ=255)
                              ttGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGa                                                                       >  2:44745/1‑100 (MQ=255)
                               tgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGATGCGACGCTGACGCGTCTTATCCGAc                                                                      >  2:2574250‑M1/69‑100 (MQ=255)
                               tgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGATGCGACGCTGACGCGTCTTATCCGAc                                                                      >  2:1556131‑M1/69‑100 (MQ=255)
                               tGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGAc                                                                      >  1:113587/1‑100 (MQ=255)
                                 cagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGATGCGACGCTGACGCGTCTTAtccggcc                                                                     >  1:1017359‑M1/67‑96 (MQ=255)
                                 cTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTTGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCt                                                                    >  1:2240102/1‑100 (MQ=255)
                                 cTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCt                                                                    >  2:2172212/1‑100 (MQ=255)
                                   ggTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTAc                                                                  >  2:2407769/1‑100 (MQ=255)
                                    gTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACg                                                                 <  1:731970/100‑1 (MQ=255)
                                      gCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACggg                                                               <  2:935216/100‑1 (MQ=255)
                                          gATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAgc                                                           <  1:2006625/100‑1 (MQ=255)
                                           aTGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTCGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGCCCTACGGGGAg                                                            >  1:801094/1‑98 (MQ=255)
                                            tGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAgcgc                                                         >  1:1185395/1‑100 (MQ=255)
                                              aaGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCAt                                                       <  2:1224828/100‑1 (MQ=255)
                                              aaGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCAt                                                       <  2:2533943/100‑1 (MQ=255)
                                               aGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCAtt                                                      <  1:164697/100‑1 (MQ=255)
                                               aGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCAtt                                                      >  2:2011179/1‑100 (MQ=255)
                                               aGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCAtt                                                      >  1:410417/1‑100 (MQ=255)
                                               aGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCAtt                                                      >  2:470162/1‑100 (MQ=255)
                                                ggTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGTTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCAtt                                                      >  1:219434/1‑99 (MQ=255)
                                                 gTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGTAGCGCATTTg                                                    <  2:1088146/100‑1 (MQ=255)
                                                  ttttACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGt                                                   <  1:898483/100‑1 (MQ=255)
                                                   tttACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTa                                                  <  2:517990/100‑1 (MQ=255)
                                                     tACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGCCGCGTCTTATCCGACCTACGGGGAGCGCGTTTGTa                                                  >  1:2440068/1‑98 (MQ=255)
                                                     tACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAgg                                                <  1:1115541/100‑1 (MQ=255)
                                                     tACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAgg                                                <  1:437807/100‑1 (MQ=255)
                                                     tACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAgg                                                <  1:2482520/100‑1 (MQ=255)
                                                       cTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGcc                                              >  2:943214/1‑100 (MQ=255)
                                                         gACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCgg                                            <  2:1279117/100‑1 (MQ=255)
                                                          aCGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGa                                           >  2:334439/1‑100 (MQ=255)
                                                            gTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATa                                         <  1:60175/100‑1 (MQ=255)
                                                             ttttGTACGTTAATCATTTTTTGCCTCGTTTTTCGTGTGACGGATGCGACTCTGACGCGTCTTATCCGACCTACGGGGCGCGCATTTGTAAGCCGGATaa                                        >  1:380990/1‑100 (MQ=25)
                                                               ttGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAgg                                      <  1:323584/100‑1 (MQ=255)
                                                               ttGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAgg                                      <  2:237907/100‑1 (MQ=255)
                                                                tGTACGTTAATCATTTTTCTCCTCGTGTTTCGGGTGTCGGATGCAACGCTGACGCGTCTTATCCTACCTACGGGGAGCGCCTTTGTCGGCCGGATCAGGc                                     >  1:120750/1‑100 (MQ=255)
                                                                tGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGc                                     >  2:919044/1‑100 (MQ=255)
                                                                 gTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCg                                    >  2:1128089/1‑100 (MQ=255)
                                                                 gTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCg                                    <  1:506900/100‑1 (MQ=255)
                                                                  tACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGt                                   <  2:1485527/100‑1 (MQ=255)
                                                                   aCGTTAATCATTTTTCTCCTCTTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGtt                                  >  1:673326/1‑100 (MQ=255)
                                                                    cGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGttt                                 >  1:2332521/1‑100 (MQ=255)
                                                                       tAATCATTTTTCGCCTCGTGGATCGCGTGTCGGATGCGACTCTCACGCGTCTTATCCTACATACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcg                              >  1:1822986/1‑100 (MQ=21)
                                                                        aaTCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgc                             >  2:166325/1‑100 (MQ=255)
                                                                        aaTCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgc                             >  2:1002039/1‑100 (MQ=255)
                                                                         aTCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgcc                            >  1:2401168/1‑100 (MQ=255)
                                                                         aTCATTTTTCGCCTCGTGGATCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTTTAGGCCGGATAAGGCGTTTAcgcc                            >  1:1757850/1‑100 (MQ=255)
                                                                               tttCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATGCGGCGTAAAcgccttatcc                      <  2:1811211/100‑7 (MQ=21)
                                                                               tttCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGGCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATGCGGCGTAAACGCCTTATcc                      <  2:715087/100‑1 (MQ=21)
                                                                                ttCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCg                     >  1:1525023/1‑100 (MQ=255)
                                                                                  cGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGc                   <  2:1163964/100‑1 (MQ=21)
                                                                                  cGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                   <  1:45188/100‑1 (MQ=255)
                                                                                    ccTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAc                 >  2:1312695/1‑100 (MQ=255)
                                                                                     cTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAcc                >  2:844194/1‑100 (MQ=255)
                                                                                     cTCGTGCTTCGGGTGTCGGACTCGCCGCTGACGCGTCTTTGCCGTCCTCGTGGGAGCGCATTTGTACGCCGGATAAGTCGTTTACGCCGCATCCGGCAcc                <  1:818095/100‑1 (MQ=18)
                                                                                       cGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCg               <  2:1055393/99‑1 (MQ=255)
                                                                                        gTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGc             <  1:166324/100‑1 (MQ=255)
                                                                                         tGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGCCCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCt            <  1:1319573/100‑1 (MQ=255)
                                                                                          ggTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTc           <  2:2416696/100‑1 (MQ=255)
                                                                                            ttCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCaa         <  1:610929/100‑1 (MQ=255)
                                                                                            ttCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCaa         >  2:1909315/1‑100 (MQ=255)
                                                                                               gggTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTc      >  1:1939982/1‑100 (MQ=255)
                                                                                               gggTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTc      >  2:310657/1‑100 (MQ=255)
                                                                                                ggTGTCGGATGCGACGCTGACGCGTCTTATCCGTCCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCt     <  2:460761/100‑1 (MQ=255)
                                                                                                   GTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCa  <  1:1338704‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCA  >  NC_000913/4317818‑4318016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.