BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4317917 =	NA (NA)	14 (0.170)	5/164	NT	NA	noncoding (1/83 nt)	REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	4317949 =	NA (NA)	14 (0.170)	5/164	NT	NA	noncoding (33/83 nt)	REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 187 total aligned reads displayed.

GCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGGA  >  NC_000913/4317850‑4318048

gcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGATGCGACGCTGACGCGTCTTATCCGAcc                                                                                                     >  1:758678‑M1/68‑100 (MQ=255)

gCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGAcc                                                                                                     >  2:1372044/1‑100 (MQ=255)

gCTGGTGCAGGATGAAGGTTTTACTGACGTTTCGTACGTGAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGAcc                                                                                                     <  1:1818459/100‑1 (MQ=255)

 cagaattgagccggtgccggatgcggcgtaaacgccttatccggcttacaaatgcgctccccgtagGTCGGATGCGACGCTGACGCGTCTTATCCGACCt                                                                                                    >  2:917046‑M1/67‑100 (MQ=255)

   ggTGCAGGGTGATGGTTGTACTGCGGTTTTGTACGTGAATCATTTTTCGCCTCGTGGTTCGGGTGGCGGATGCGACGCTGACGCGTCTTATCCGACCTa                                                                                                   <  1:2273758/99‑1 (MQ=37)

      gCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACggg                                                                                               <  2:935216/100‑1 (MQ=255)

        aGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGa                                                                                             <  2:1466320/100‑1 (MQ=255)

        aGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGT‑‑‑‑GTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAgcgc                                                                                         >  1:2202032/1‑100 (MQ=37)

         ggATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAg                                                                                            >  2:2413263/1‑100 (MQ=255)

          gATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAgc                                                                                           <  1:2006625/100‑1 (MQ=255)

           aTGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTCGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGCCCTACGGGGAg                                                                                            >  1:801094/1‑98 (MQ=255)

            tGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAgcgc                                                                                         >  1:1185395/1‑100 (MQ=255)

              aaGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCAt                                                                                       <  2:2533943/100‑1 (MQ=255)

               aGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCAtt                                                                                      <  1:164697/100‑1 (MQ=255)

                  ttttACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGt                                                                                   <  1:898483/100‑1 (MQ=255)

                   tttACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTa                                                                                  <  2:517990/100‑1 (MQ=255)

                   tttACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTa                                                                                  <  2:1239361/100‑1 (MQ=255)

                     tccTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTGGGATGCGACGCTGTCGCGTCTTATCCGACCTACGCGGAGCGCATGTGTa                                                                                  >  1:2438445/3‑98 (MQ=37)

                     tACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAgg                                                                                <  1:1115541/100‑1 (MQ=255)

                      aCTGACGGGTTGTACGTTAATCATGTTTCGCTTCGTGGTTCGGGTGTTGGATGCGACGCTGACGCGTCTTATCCGACGTACGGGGAGCACATTTGTAgg                                                                                <  1:317747/99‑1 (MQ=37)

                       cTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGcc                                                                              >  2:943214/1‑100 (MQ=255)

                          aCGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGa                                                                           >  2:334439/1‑100 (MQ=255)

                           cGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGAt                                                                          <  2:2035097/100‑1 (MQ=255)

                            gTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATa                                                                         <  1:60175/100‑1 (MQ=255)

                             ttttGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATaa                                                                        >  2:11265/1‑100 (MQ=255)

                                tGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGc                                                                     >  2:919044/1‑100 (MQ=255)

                                 gTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCTGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCg                                                                    <  2:865516/100‑1 (MQ=255)

                                 gTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCg                                                                    >  1:121539/1‑100 (MQ=255)

                                 gTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCg                                                                    >  2:1128089/1‑100 (MQ=255)

                                  tACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGt                                                                   <  2:1485527/100‑1 (MQ=255)

                                  tACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGt                                                                   <  2:574088/100‑1 (MQ=255)

                                   aCGTTAATCATTTTTCTCCTCTTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGtt                                                                  >  1:673326/1‑100 (MQ=255)

                                    cGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGttt                                                                 >  1:2332521/1‑100 (MQ=255)

                                    cGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGttt                                                                 >  2:691048/1‑100 (MQ=255)

                                         aTCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgcc                                                            >  1:2401168/1‑100 (MQ=255)

                                          tCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTAcgccg                                                           <  2:1000319/100‑1 (MQ=255)

                                               tttCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATGCGGCGTAAAcgccttatcc                                                      <  2:1811211/100‑7 (MQ=21)

                                               tttCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGGCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATGCGGCGTAAACGCCTTATcc                                                      <  2:715087/100‑1 (MQ=21)

                                                   gCCTCGTTGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                   <  2:421745/99‑1 (MQ=255)

                                                   gCCTCGTGGTTCGGGTGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                                                    >  1:446724/1‑98 (MQ=255)

                                                   gCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                  >  2:1157022/1‑100 (MQ=255)

                                                   gCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                  >  1:207149/1‑100 (MQ=255)

                                                     cTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAcc                                                >  2:2421085/1‑100 (MQ=255)

                                                     cTCGTGCTTCGGGTGTCGGACTCGCCGCTGACGCGTCTTTGCCGTCCTCGTGGGAGCGCATTTGTACGCCGGATAAGTCGTTTACGCCGCATCCGGCAcc                                                <  1:818095/100‑1 (MQ=18)

                                                       cGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCg                                               <  2:1055393/99‑1 (MQ=255)

                                                       cGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCGACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCgg                                              <  1:1557407/100‑1 (MQ=255)

                                                        gTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGc                                             <  1:357786/100‑1 (MQ=255)

                                                        gTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGc                                             <  2:47712/100‑1 (MQ=255)

                                                         tGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGCCCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCt                                            <  1:1319573/100‑1 (MQ=255)

                                                         tGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCt                                            <  1:582023/100‑1 (MQ=255)

                                                            ttCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCaa                                         <  1:610929/100‑1 (MQ=255)

                                                            ttCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCaa                                         >  2:1909315/1‑100 (MQ=255)

                                                               gggTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTc                                      >  1:1939982/1‑100 (MQ=255)

                                                               gggTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTc                                      >  2:310657/1‑100 (MQ=255)

                                                               gggTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTc                                      >  1:416421/1‑100 (MQ=255)

                                                                ggTGTCGGATGCGACGCTGACGCGTCTTATCCGTCCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCt                                     <  2:460761/100‑1 (MQ=255)

                                                                ggTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCt                                     >  2:1643742/1‑100 (MQ=255)

                                                                ggTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCt                                     >  2:235883/1‑100 (MQ=255)

                                                                 gtgtCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTg                                    <  2:2240117/100‑1 (MQ=255)

                                                                 gtgtCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTg                                    <  2:1254202/100‑1 (MQ=255)

                                                                 gtgtCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTg                                    <  2:200324/100‑1 (MQ=255)

                                                                  tgtCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGc                                   <  1:390504/100‑1 (MQ=255)

                                                                  ggccggataagacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTg                                    >  1:1017359‑M2/34‑99 (MQ=255)

                                                                   gtcggataagacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCa                                  >  2:2574250‑M2/33‑100 (MQ=255)

                                                                   gtcggataagacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCa                                  >  2:1556131‑M2/33‑100 (MQ=255)

                                                                   gtcggataagacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCa                                  >  2:16244‑M2/33‑100 (MQ=255)

                                                                   GTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCa                                  <  2:2016377‑M1/100‑1 (MQ=255)

                                                                   GTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCa                                  <  1:1338704‑M1/100‑1 (MQ=255)

                                                                     CGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCaaa                                <  2:835518‑M1/100‑1 (MQ=255)

                                                                      ggataagacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCaaaa                               >  2:1939278‑M2/30‑100 (MQ=255)

                                                                      ggataagacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCaaa                                >  1:2465794‑M2/30‑99 (MQ=255)

                                                                      GGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCaaaa                               >  1:11265‑M1/1‑100 (MQ=255)

                                                                       gataagacgcgtcagcgtcgcatccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAAc                              >  1:2555108‑M2/29‑100 (MQ=255)

                                                                         TGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCg                            <  2:2393001‑M1/100‑1 (MQ=255)

                                                                          gCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGa                           <  1:1879101/100‑1 (MQ=255)

                                                                            gACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATg                         <  2:1034344/100‑1 (MQ=255)

                                                                            gACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCACATCCGGCACCGGCTCAATTCTGCAAAACCGATg                         <  2:2501683/100‑1 (MQ=255)

                                                                              cGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGac                       <  1:1736750/100‑1 (MQ=255)

                                                                              cGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGac                       <  1:1788393/100‑1 (MQ=255)

                                                                               gCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGaca                      <  2:119266/100‑1 (MQ=255)

                                                                                cTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGacac                     >  1:1650413/1‑100 (MQ=255)

                                                                                cTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGacac                     >  1:231335/1‑100 (MQ=255)

                                                                                 tGACGCGTCTTATCCGTCCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGGTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACAcc                    <  1:694786/100‑1 (MQ=255)

                                                                                 tGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACAcc                    <  1:2496549/100‑1 (MQ=255)

                                                                                 tGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACAcc                    <  1:1273451/100‑1 (MQ=255)

                                                                                  gACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACca                   >  2:176274/1‑100 (MQ=255)

                                                                                  gACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACca                   <  2:2166660/100‑1 (MQ=255)

                                                                                    cgcgTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACcagc                 >  1:50612/1‑100 (MQ=255)

                                                                                    cgcgTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACcagc                 <  1:2586801/100‑1 (MQ=255)

                                                                                       gTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCagcagc              <  2:1075948/100‑1 (MQ=255)

                                                                                          ttATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCtgt           >  1:499952/1‑100 (MQ=255)

                                                                                          ttATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGAAAAACCGATGACACCAGCAGCtgt           >  2:219165/1‑100 (MQ=255)

                                                                                           tATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCtgtg          <  2:110869/100‑1 (MQ=255)

                                                                                           tATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCtgtg          <  1:1312688/100‑1 (MQ=255)

                                                                                            atccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCtgtg          <  1:1032532‑M2/92‑1 (MQ=255)

                                                                                            atccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTgtgt         >  2:1911819‑M2/8‑100 (MQ=255)

                                                                                             tgcgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCtg            <  1:1456785‑M2/90‑1 (MQ=255)

                                                                                             tccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGta        <  1:651932‑M2/94‑1 (MQ=255)

                                                                                              ccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTgtaa       >  2:651935‑M2/6‑99 (MQ=255)

                                                                                                   cTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGga  >  2:1280035/1‑100 (MQ=255)

GCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGGA  >  NC_000913/4317850‑4318048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.