New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 462212391 (0.990)3 (0.030) 3/168 NT 3.4% coding (355/1332 nt) yjjJ putative protein kinase
?NC_000913 = 4622142 87 (1.010)coding (374/1332 nt) yjjJ putative protein kinase
Rejected: Frequency below cutoff threshold.

Only 100 of 112 total aligned reads displayed.

GGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTG  >  NC_000913/4622024‑4622222
                                                                                                   |                                                                                                   
ggAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCG                                                                                                     >  1:1611484‑M1/1‑100 (MQ=255)
ggAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCG                                                                                                     <  2:21428‑M1/100‑1 (MQ=255)
  aaGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGcgcgcg                                                                                                   <  2:803733/100‑1 (MQ=255)
    tccgatctgTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTg                                                                                                 <  1:1321964/92‑1 (MQ=255)
    gTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTg                                                                                                 <  1:2516607/100‑1 (MQ=255)
          tGGTAACAGGCGCAGATGGCGAGGAACAGTGGTTTGATGGTTTGACCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGTGCGCGTGGGGCa                                                                                            >  1:1443345/1‑99 (MQ=255)
          tGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAg                                                                                           >  1:1657660/1‑100 (MQ=255)
           ggTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAgg                                                                                          >  2:2451147/1‑100 (MQ=255)
            gTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTgagatcgga                                                                                         >  2:1321971/1‑92 (MQ=255)
            gTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGa                                                                                         <  1:393384/100‑1 (MQ=255)
              aaCAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCCTTTTAGGGCGCGCGTGGGGCAGGAAg                                                                                       <  2:1573494/100‑1 (MQ=255)
               aCAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGt                                                                                      <  2:898335/100‑1 (MQ=255)
               aCAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAAGGCGCGCGTGGGGCAGGAAGt                                                                                      <  1:972672/100‑1 (MQ=255)
                cAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGtt                                                                                     <  2:2199202/100‑1 (MQ=255)
                 aGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTa                                                                                    <  1:2451875/100‑1 (MQ=255)
                  ggCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTCGGGCGCGCGTGGGGCAGGAAGTTAg                                                                                   >  1:1194844/1‑100 (MQ=255)
                  ggCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAg                                                                                   >  2:1993703/1‑100 (MQ=255)
                  ggCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAg                                                                                   >  2:267520/1‑100 (MQ=255)
                   gcgcAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAg                                                                                   >  2:1942403/1‑99 (MQ=255)
                   gcgcAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGc                                                                                  <  2:1657669/100‑1 (MQ=255)
                       aGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCcgcg                                                                              >  2:1953963‑M2/1‑96 (MQ=255)
                         aTGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCa                                                                            <  1:2128746/100‑1 (MQ=255)
                          tGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTACGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCaa                                                                           <  2:2459571/100‑1 (MQ=255)
                           ggCGACGCACAGTGGTTTCATGGTTTGCCCTGGTCTTTGCCCCATCAACGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAAc                                                                          <  2:2064634/100‑1 (MQ=255)
                            gCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGgctaacttcctgccccacgcgcgcccta                                                                         <  1:1084972‑M1/100‑29 (MQ=255)
                            gCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACt                                                                         >  2:144573/1‑100 (MQ=255)
                             cgacgaACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTg                                                                        <  1:1794766/100‑1 (MQ=255)
                             cgacgaACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTg                                                                        >  1:85576/1‑100 (MQ=255)
                              gacgaACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGa                                                                       >  1:1985287/1‑100 (MQ=255)
                                 gaACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATc                                                                    <  2:416698/100‑1 (MQ=255)
                                   aCAGTGGTTTGATGGTTTGCCATGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCCGGAAGTTAGCCGCGCAACTGAATctg                                                                  >  1:2478213/1‑100 (MQ=255)
                                      gTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATctgact                                                               >  1:468740/1‑100 (MQ=255)
                                        ggTTTTATGGTTTGCCCTGGTATTTTTCCGGTCTACGGCCGCAGGGCTTTTGAGGGAGCGCGTGGGGAAGGAAGTTAGCAGCGCCACTCACTctgcc                                                                <  1:1119627/97‑3 (MQ=255)
                                          tttGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACtgatg                                                           <  2:1250499/100‑1 (MQ=255)
                                          tttGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACtgatg                                                           <  1:198045/100‑1 (MQ=255)
                                            tGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTgatgat                                                         >  2:1594434/1‑100 (MQ=255)
                                             gATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGata                                                        >  2:686646/1‑100 (MQ=255)
                                               tGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGAtata                                                      >  2:1875945/1‑100 (MQ=255)
                                                ggTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATAc                                                     >  2:1923360/1‑100 (MQ=255)
                                                 gTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACg                                                    <  1:1344737/100‑1 (MQ=255)
                                                   ttGCCCTGGTATTTGCCCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGCCTGATGATATACGtc                                                  <  1:896301/100‑1 (MQ=255)
                                                     gcacTGGAATTTGACCGATATCCGACCGCAGAGCTTTTCAGGGCGCGCGAGGGGCAGTAAGTTAGCCGCGCAACTGAATCTGACTGAGGATAGACGtctc                                                >  1:2424772/4‑100 (MQ=255)
                                                     gCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGtctc                                                <  1:1942393/100‑1 (MQ=255)
                                                     gCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGtctc                                                >  1:1374798/1‑100 (MQ=255)
                                                      cccTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGtctc                                                >  2:1102175/1‑99 (MQ=255)
                                                        cTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTgg                                             >  1:833567/1‑100 (MQ=255)
                                                         nggTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGc                                            >  1:24089/2‑100 (MQ=255)
                                                           gTATTTGATCGATTTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAAGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAg                                          <  2:2155742/100‑1 (MQ=255)
                                                             aTTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGga                                        <  1:974424/100‑1 (MQ=255)
                                                             aTTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGga                                        >  2:874076/1‑100 (MQ=255)
                                                               ttGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGgaag                                      <  1:1472395/100‑1 (MQ=255)
                                                               ttGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGgaag                                      >  2:511306/1‑100 (MQ=255)
                                                                tGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGgaaga                                     >  1:221740/1‑100 (MQ=255)
                                                                 gACTGATCTCCGACCGCAGATCTTTTTATGGCGCGCGTGGTGCAGTAAGTTAGACGCGCAACTGAATATGACTGTTTTTATACGTCTCTGGCAGgaaga                                     >  1:272206/1‑99 (MQ=255)
                                                                  aCCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGaagaag                                   <  2:777004/100‑1 (MQ=255)
                                                                    cGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGTGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAagaaga                                  >  1:895805/1‑99 (MQ=255)
                                                                     gATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGAtg                                >  1:1898826/1‑100 (MQ=255)
                                                                     gATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGAtg                                >  1:609985/1‑100 (MQ=255)
                                                                     gATCTCCGACCGCAGGACTTTTTAGGGTGCGAGTGGGGCAGGAAGTTAGCCGCGCAACTTAATCTGACTGATGATATACGTCTCTGGCAGgaagaa                                    >  1:231309/1‑96 (MQ=255)
                                                                      ctctcCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGAtgt                               <  2:1605064/99‑1 (MQ=255)
                                                                       tctcCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGAtgtg                              <  1:1907652/100‑1 (MQ=255)
                                                                        ctcCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGATGAAGATGTGc                             <  2:2463942/100‑1 (MQ=255)
                                                                        ctcCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGc                             <  1:2553766/100‑1 (MQ=255)
                                                                        ctcCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGc                             >  2:365032/1‑100 (MQ=255)
                                                                        ctcCGACCGCAGGCCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGAtgtag                             >  1:1605055/1‑98 (MQ=255)
                                                                         tcCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGct                            >  2:1241477/1‑100 (MQ=255)
                                                                         tcCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGct                            >  2:2331902/1‑100 (MQ=255)
                                                                         tcCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGct                            >  2:1933166/1‑100 (MQ=255)
                                                                          ccGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGctc                           >  2:1802606/1‑100 (MQ=255)
                                                                           cGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGctct                          >  2:794806/1‑100 (MQ=255)
                                                                           cGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGctct                          <  2:1042274/100‑1 (MQ=255)
                                                                                gCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGc                      <  1:2274908/99‑1 (MQ=255)
                                                                                 cAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGccc                    >  1:1106713/1‑100 (MQ=255)
                                                                                 cAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGccc                    <  2:2334893/100‑1 (MQ=255)
                                                                                 cAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGccc                    <  1:2492036/100‑1 (MQ=255)
                                                                                     gCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGAc                >  2:1926695/1‑100 (MQ=255)
                                                                                     gCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGAc                >  1:1498144/1‑100 (MQ=255)
                                                                                     gCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGAc                >  2:638865/1‑100 (MQ=255)
                                                                                     gCTTTTTAGGGCGCGCGTGGGGCACGCAGTTACCCGCGCAACAGCATCCGACTGATGAAACACGCCTCTCACAGTCAGAAGATGTGCTCTACTccc                    >  1:203289/1‑96 (MQ=255)
                                                                                      cTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCcgcgccctaaaaagccctgcggtcggagatcggtgaaataccagggcaaaccatcaaaccactgttc               <  1:1821178‑M2/100‑68 (MQ=255)
                                                                                      cTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGAcc               >  2:1954018/1‑100 (MQ=255)
                                                                                       tttttAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCg              <  2:952257/100‑1 (MQ=255)
                                                                                        ttttAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGGAGAAGATGTGCTCTACGCCCTGACCGt             >  2:1287432/1‑100 (MQ=255)
                                                                                          ttAGGGCGCGCGTGGGGCAGGAAGTTAGCcgcggcctaaaaagccctgcggtcggagctcggtcaaataccatggcaaaccatcaaaccactgttcgtc            <  1:2134916‑M2/99‑71 (MQ=255)
                                                                                          ttAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGCATCTGACTGATGATATACGTCTCTGGCAGTAAGAAGATGTGCTCTACGCCCTGACCGTa            <  2:551245/99‑1 (MQ=255)
                                                                                          ttAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTAt           <  2:1727630/100‑1 (MQ=255)
                                                                                           tAGGGCGCGCGTGGGGCAGGAAGTTAGCcgcgccctaaaaagccctgcggtcggagatcggtcaaataccagggcaaaccatcaaaccactgttcgtcgc          <  1:1084972‑M2/100‑73 (MQ=255)
                                                                                           tAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTAtt          <  1:686643/100‑1 (MQ=255)
                                                                                           tAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTAtt          >  2:1499652/1‑100 (MQ=255)
                                                                                           tAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTAt           <  1:2423352/99‑1 (MQ=255)
                                                                                            aGGGCGTGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTAttt         <  1:1063570/100‑1 (MQ=255)
                                                                                            aGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTAttt         <  2:873504/100‑1 (MQ=255)
                                                                                            aGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTAtt          >  1:1739757/1‑99 (MQ=255)
                                                                                             gggCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTa        >  2:548468/1‑100 (MQ=255)
                                                                                               gcgcgcGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAAc      <  2:1463421/100‑1 (MQ=255)
                                                                                                cgcggctaacttcctgccccacgcgcgccctaaaaagccctgcggtcggagatcggtcaaataccagggcaaaccatcaaaccactgttcgtcgccatct     >  2:1953963‑M1/1‑4 (MQ=255)
                                                                                                cgcgcgTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATCTCCGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACg     <  1:2439016/100‑1 (MQ=255)
                                                                                                 gcgcgTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAAc      <  1:2534766/98‑1 (MQ=255)
                                                                                                 gcgcgTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACgg    <  2:592904/100‑1 (MQ=255)
                                                                                                   gcgTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTg  <  2:1385631/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTG  >  NC_000913/4622024‑4622222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.