New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 463832982 (0.890)8 (0.090) 5/168 NT 8.8% coding (152/1353 nt) creD inner membrane protein
?NC_000913 = 4638348 89 (1.030)coding (171/1353 nt) creD inner membrane protein
Rejected: Frequency below cutoff threshold.

Only 100 of 119 total aligned reads displayed.

CTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACGAAGTTTTAT  >  NC_000913/4638232‑4638428
                                                                                                 |                                                                                                   
 tgttgtTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGcc                                                                                                  >  2:1664691/1‑100 (MQ=255)
 tgttgtTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGcc                                                                                                  <  1:1315323/100‑1 (MQ=255)
  gttgttGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCg                                                                                                 >  2:585411/1‑100 (MQ=255)
    tgttgATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCa                                                                                               <  2:1437767/100‑1 (MQ=255)
       tgATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCaaaa                                                                                            >  1:1132174/1‑100 (MQ=255)
         aTTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAAc                                                                                          >  2:2561735/1‑100 (MQ=255)
         aTTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAAc                                                                                          <  1:2062707/100‑1 (MQ=255)
         aTTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAAc                                                                                          <  2:1132178/100‑1 (MQ=255)
          ttCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACt                                                                                         >  2:1929639/1‑100 (MQ=255)
           tCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTc                                                                                        >  2:2328214/1‑100 (MQ=255)
           tCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTc                                                                                        >  2:1709834/1‑100 (MQ=255)
            ccGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCg                                                                                       >  1:1456450/1‑100 (MQ=255)
              gATAAGGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGt                                                                                      <  1:1204714/99‑1 (MQ=255)
                 aaTGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTggg                                                                                  >  2:382412/1‑100 (MQ=255)
                 aaTGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTggg                                                                                  >  1:1116907/1‑100 (MQ=255)
                  aTGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGc                                                                                 >  2:1301540‑M2/1‑99 (MQ=255)
                   tGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGcc                                                                                >  2:697574‑M2/1‑98 (MQ=255)
                     cTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGcccaacgagtttttgcggcccgc                                                                              <  1:1234769‑M1/100‑24 (MQ=255)
                     cTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGccgc                                                                              <  1:2506233‑M2/100‑5 (MQ=255)
                      tGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGcccaacgagtttttgcggcccgct                                                                             <  2:651539‑M1/100‑25 (MQ=255)
                      tGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGcccaacgagtttttgcggcccgct                                                                             <  1:1290112‑M1/100‑25 (MQ=255)
                      tGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGccgct                                                                             >  2:783376‑M2/1‑95 (MQ=255)
                       gATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGcccaacgagtttttgcggcccgctn                                                                            <  2:976917‑M1/100‑26 (MQ=255)
                        aTTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGccgct                                                                             >  2:1041778‑M2/1‑93 (MQ=255)
                         ttCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGcccaacgagtttttgcggcccgctggt                                                                          <  2:2021997‑M1/100‑28 (MQ=255)
                          tCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGcccaacgagtttttgcggcccgctggt                                                                          <  1:1246513‑M1/99‑28 (MQ=255)
                          tCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATc                                                                         <  1:54135/100‑1 (MQ=255)
                           cGGCAGGTGATTGTCGAACGTGCTGCTTACCGTAGCGATGTGGAAGATGCGATTCGCCAAATTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCg                                                                        <  2:1163549/100‑1 (MQ=255)
                           cGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCg                                                                        >  1:166819/1‑100 (MQ=255)
                            ggCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGc                                                                       <  1:982161/100‑1 (MQ=255)
                             gCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCt                                                                      <  2:1771405/100‑1 (MQ=255)
                                ggTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTAtt                                                                   <  1:289670/100‑1 (MQ=255)
                                 gTGATTGTCGAACGTGCTGATTATCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCGGCAAAAAGCGGTTGGGCCGCTCATCGCTATTc                                                                  >  1:1105663/1‑100 (MQ=255)
                                 gTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTc                                                                  >  1:845023/1‑100 (MQ=255)
                                  tGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTcc                                                                 <  1:1712612/100‑1 (MQ=255)
                                    aTTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCtg                                                               <  1:2220556/100‑1 (MQ=255)
                                     ttGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCtgt                                                              <  2:1271230/100‑1 (MQ=255)
                                      tGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCtgtg                                                             <  2:919523/100‑1 (MQ=255)
                                      tGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCtgtg                                                             >  2:1449413/1‑100 (MQ=255)
                                      tGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCtgtg                                                             <  1:1351199/100‑1 (MQ=255)
                                      tGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCtgtg                                                             <  1:1611382/100‑1 (MQ=255)
                                       gTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAACAACTCGTTGGGCCGCTCATCACTATTCCtgtg                                                             >  1:570157/1‑99 (MQ=255)
                                        tCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGan                                                           <  2:2108679/100‑2 (MQ=255)
                                            aCGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGan                                                       <  1:2232034/100‑2 (MQ=255)
                                              gTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCt                                                     >  1:950031/1‑100 (MQ=255)
                                               tGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCtt                                                    >  1:1140712/1‑100 (MQ=255)
                                               tGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCtt                                                    >  1:68676/1‑100 (MQ=255)
                                                    aTTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATAc                                               <  1:1835767/100‑1 (MQ=255)
                                                     ttACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACg                                              >  1:1085373/1‑100 (MQ=255)
                                                      tACCGTAGCGATGGGGAAGATGCGATTCGCCAAAGTACAAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACg                                              >  1:1598194/1‑99 (MQ=255)
                                                        ccGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTg                                           >  1:76250/1‑100 (MQ=255)
                                                         cGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGc                                          <  2:667449/100‑1 (MQ=255)
                                                          gTAGCGATGTGGAAGATGCGATTCGCTAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGc                                          <  1:1503444/99‑1 (MQ=255)
                                                           tAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAg                                        <  2:387258/100‑1 (MQ=255)
                                                            agggATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAgg                                       <  1:2376782/97‑1 (MQ=255)
                                                            aGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAgg                                       <  2:465881/100‑1 (MQ=255)
                                                             ncGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGa                                      >  1:2524152/2‑100 (MQ=255)
                                                             gCGTTGTGGAAGATGGGATTCGCCTAAGTAGCGGCAGGCCGCAATAACTCGTTTGGCCGCTCAGCGCTATTGGTGTGACCGAGCTTTATACGGTGGAg                                        <  1:718077/98‑1 (MQ=255)
                                                             gCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGa                                      >  2:586349/1‑100 (MQ=255)
                                                             gCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGa                                      <  2:683446/100‑1 (MQ=255)
                                                                 tgtgGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAagag                                  >  1:1312025/1‑100 (MQ=255)
                                                                  gtgGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATAGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAgg                                 >  2:975686/1‑100 (MQ=255)
                                                                   tgGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGa                                <  2:1043019/100‑1 (MQ=255)
                                                                    ggAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAGACTCGGTGGGCCGCTCAGCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAgg                                 >  2:1972660/1‑98 (MQ=255)
                                                                    ggAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGAt                               >  1:598267/1‑100 (MQ=255)
                                                                     gAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATa                              <  2:1369807/100‑1 (MQ=255)
                                                                       aGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATaaa                            >  2:1931613/1‑100 (MQ=255)
                                                                        gATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATaaaa                           >  1:1729298/1‑100 (MQ=255)
                                                                        gATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATaaaa                           >  1:73008/1‑100 (MQ=255)
                                                                         aTGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAAc                          <  1:1626621/100‑1 (MQ=255)
                                                                         aTGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAAc                          >  2:2310104/1‑100 (MQ=255)
                                                                             gATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTg                      >  1:2376740/1‑100 (MQ=255)
                                                                             gATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTg                      >  2:738857/1‑100 (MQ=255)
                                                                             gATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTg                      <  2:2251104/100‑1 (MQ=255)
                                                                                 cGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGc                  >  2:582605/1‑100 (MQ=255)
                                                                                 cGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGc                  >  1:1058851/1‑100 (MQ=255)
                                                                                 cGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGc                  >  2:307745/1‑100 (MQ=255)
                                                                                  gCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCg                 >  1:1220927/1‑100 (MQ=255)
                                                                                    cAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGa               >  2:1079653/1‑100 (MQ=255)
                                                                                     aaaGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGaa              <  2:1852527/100‑1 (MQ=255)
                                                                                       aGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAAc            <  1:609760/100‑1 (MQ=255)
                                                                                        gtcccAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACg           <  1:280252/97‑1 (MQ=255)
                                                                                        gTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACg           <  2:2174512/100‑1 (MQ=255)
                                                                                          aCCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACGaa         >  2:1762610/1‑100 (MQ=255)
                                                                                           cccgCGGGCCGCAAAAACCCGTTGGGCGGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGGGCAGGAAGAGGATAAAACCGTGGAGCGGAAACGa          <  2:1674930/95‑1 (MQ=255)
                                                                                           ccAGCGGGCCGCAAAAACTCGTTGGGccgctggtactttggcgaatcgcatcttccacatcgctacggtaatcagcacgttcgacaatcacctgccgaat        <  1:1667830‑M2/100‑75 (MQ=255)
                                                                                            cAGCGGGCCGCAAAAACTCGTTGGGccgctggtactttggcgaatcgcatcttccacatcgctacggtaatcagcacgttcgacaatcacctgccgaatc       <  2:2314367‑M2/100‑76 (MQ=255)
                                                                                            cAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACGAAGt       >  2:2024584/1‑100 (MQ=255)
                                                                                            cAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACGAAGt       <  2:1652905/100‑1 (MQ=255)
                                                                                             aGCGGcccaacgagtttttgcggcccgctggtactttggcgaatcgcatcttccacatcgctacggtaatcagcacgttcgacaatcacctgccgaat        >  2:1041778‑M1/1‑5 (MQ=255)
                                                                                             aGCGGGCCGCAAAAACTCGTTGGGccgctggtactttggcgaatcgcatcttccacatcgctacggtaatcagcacgttcgacaatcacctgccgaatca      <  1:1290112‑M2/100‑77 (MQ=255)
                                                                                             aGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACGAAGtt      >  2:1358176/1‑100 (MQ=255)
                                                                                              gCGGcccaacgagtttttgcggcccgctggtactttggcgaatcgcatcttccacatcgctacggtaatcagcacgttcgacaatcacctgccgaatcag     <  2:179718‑M1/100‑97 (MQ=255)
                                                                                              gCGGcccaacgagtttttgcggcccgctggtactttggcgaatcgcatcttccacatcgctacggtaatcagcacgttcgacaatcacctgccgaatcag     <  1:2506233‑M1/100‑97 (MQ=255)
                                                                                              gCGGGCCGCAAAAACTCGTTGGGccgctggtactttggcgaatcgcatcttccacatcgctacggtaatcagcacgttcgacaatcacctgccgaatcag     <  1:1234769‑M2/100‑78 (MQ=255)
                                                                                              gCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACGAAGttt     >  1:15663/1‑100 (MQ=255)
                                                                                              gCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACGAAGttt     <  2:899107/100‑1 (MQ=255)
                                                                                                gggCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACGAAGTTTTa   <  1:870743/100‑1 (MQ=255)
                                                                                                ggcccaacgagtttttgcggcccgctggtactttggcgaatcgcatcttccacatcgctacggtaatcagcacgttcgacaatcacctgccgaatcagca   >  2:697574‑M1/1‑2 (MQ=255)
                                                                                                 gcccaacgagtttttgcggcccgctggtactttggcgaatcgcatcttccacatcgctacggtaatcagcacgttcgacaatcacctgccgaatcagcat  >  2:1301540‑M1/1‑1 (MQ=255)
                                                                                                 |                                                                                                   
CTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACGAAGTTTTAT  >  NC_000913/4638232‑4638428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.