New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3344992 =81 (0.880)13 (0.160) 7/158 NT 16.5% coding (276/1434 nt) rpoN RNA polymerase, sigma 54 (sigma N) factor
?NC_000913 3345024 = 60 (0.740)coding (308/1434 nt) rpoN RNA polymerase, sigma 54 (sigma N) factor

Only 100 of 113 total aligned reads displayed.

CCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACAC  >  NC_000913/3344925‑3345123
                                                                                                   |                                                                                                   
ccgACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGa                                                                                                     <  2:1831209/100‑1 (MQ=255)
 tcaggtaatcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCTGGTACACCATCCGGCACCAGCGGTGAc                                                                                                    >  2:771088‑M1/67‑100 (MQ=255)
  gACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACt                                                                                                   <  2:1983462/100‑1 (MQ=255)
     acgcTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACa                                                                                                >  1:2332324/2‑100 (MQ=255)
      cgcTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACAt                                                                                               >  2:1420218/1‑100 (MQ=255)
      cgcTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACAt                                                                                               >  2:85039/1‑100 (MQ=255)
       gcTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACAtt                                                                                              >  2:325612/1‑100 (MQ=255)
        cTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTg                                                                                             >  2:547990/1‑100 (MQ=255)
        cTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTg                                                                                             >  2:2028971/1‑100 (MQ=255)
        cTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTg                                                                                             <  2:274311/100‑1 (MQ=255)
        cTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTg                                                                                             >  1:1197367/1‑100 (MQ=255)
         tCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTga                                                                                            <  2:2254156/100‑1 (MQ=255)
          cGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTgag                                                                                           >  1:274308/1‑99 (MQ=255)
          cGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTgac                                                                                           >  2:929725/1‑100 (MQ=255)
          cGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTgac                                                                                           <  2:2070205/100‑1 (MQ=255)
           gAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTgac                                                                                           <  1:2029091/99‑1 (MQ=255)
             gccaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatctagtCACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTgacgac                                                                                        >  1:2573028‑M1/55‑100 (MQ=255)
                  aaGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCt                                                                                   >  1:665153/1‑100 (MQ=255)
                     agaTGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGcc                                                                                <  1:2258934/100‑1 (MQ=255)
                        tGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGt                                                                             >  2:1326366/1‑100 (MQ=255)
                        tGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGt                                                                             >  1:790292/1‑100 (MQ=255)
                           cGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTa                                                                          >  2:1446898/1‑100 (MQ=255)
                           cGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGCACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTa                                                                          >  2:1893442/1‑100 (MQ=255)
                            ggAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCt                                                                           <  1:2236326/98‑1 (MQ=255)
                            ggAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTAc                                                                         <  2:135067/100‑1 (MQ=255)
                            ggAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTAc                                                                         <  1:1146521/100‑1 (MQ=255)
                            ggAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTGACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCgg                                                                              <  1:2153356/95‑1 (MQ=255)
                             gAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTAcc                                                                        <  2:2522476/100‑1 (MQ=255)
                                  gCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGc                                                                   >  2:2369210/1‑100 (MQ=255)
                                    tGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTTGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGa                                                                 >  1:1591852/1‑100 (MQ=255)
                                    tGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGa                                                                 <  2:2155339/100‑1 (MQ=255)
                                     gCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGGGCTGCCGGTCTACCAGGGCGa                                                                 >  2:645932/1‑99 (MQ=255)
                                        gCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAacg                                                             >  2:1567855/1‑100 (MQ=255)
                                        gCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAacg                                                             <  1:613447/100‑1 (MQ=255)
                                         cTCGATGCCAGTTGGGACCCCATTTAAACCGCTGGTACACCATCCGGCACCAGCGGTGACTACCTTGACGACGAGCTGCCGGTCTACCAGGGCGAAacga                                                            <  2:1777860/100‑1 (MQ=255)
                                            gATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGc                                                         <  1:1541620/100‑1 (MQ=255)
                                            gATGCAAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGc                                                         <  2:1926372/100‑1 (MQ=255)
                                             aTGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGCGCGAAACGACGCa                                                        <  2:1759833/100‑1 (MQ=255)
                                              tGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAg                                                       <  1:2398249/100‑1 (MQ=255)
                                                  aGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCt                                                   >  2:2077223/1‑100 (MQ=255)
                                                    ttGGGACACCATTTACGCCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTg                                                 <  1:371144/100‑1 (MQ=255)
                                                     tGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGc                                                >  1:351119/1‑100 (MQ=255)
                                                     gtcgtcaatgtagtcaccgctggtgccggatggtgtaccagcggtgACTAGATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTGGc                                                >  1:2573028‑M2/47‑100 (MQ=255)
                                                        gACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAgg                                             <  2:1763966/100‑1 (MQ=255)
                                                        gACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAgg                                             >  1:787232/1‑100 (MQ=255)
                                                        gACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAgg                                             >  2:122839/1‑100 (MQ=255)
                                                         acacCATTTACACCGCTGGTACACCATCCAGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGa                                            >  1:2467806/1‑100 (MQ=255)
                                                          cacCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGAt                                           >  2:907714/1‑100 (MQ=255)
                                                            ccATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTa                                         <  2:1924326/100‑1 (MQ=255)
                                                             cATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTAc                                        <  1:1650274/100‑1 (MQ=255)
                                                             cATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTAc                                        <  1:293210/100‑1 (MQ=255)
                                                              aTTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTAcc                                       <  2:1542042/100‑1 (MQ=255)
                                                                 tACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGa                                    >  1:2000469/1‑100 (MQ=255)
                                                                 tACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCAGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGa                                    <  1:2401269/100‑1 (MQ=255)
                                                                 gtcaccgctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGa                                    >  2:771088‑M2/35‑100 (MQ=255)
                                                                  tcaccgctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAt                                   <  1:771085‑M2/67‑1 (MQ=255)
                                                                  acacCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGan                                   <  1:1171747/100‑2 (MQ=255)
                                                                   caccgctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtg                                  >  1:1841679‑M2/33‑100 (MQ=255)
                                                                   caccgctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtg                                  >  2:2120488‑M2/33‑100 (MQ=255)
                                                                   caccgctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtg                                  >  1:3080‑M2/33‑100 (MQ=255)
                                                                   CACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtg                                  <  1:1579473‑M1/100‑1 (MQ=255)
                                                                    ACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtgt                                 <  1:698486‑M1/100‑1 (MQ=255)
                                                                     ccgctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtgtg                                >  2:14322‑M2/31‑100 (MQ=255)
                                                                     ccgctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtgtg                                >  2:84133‑M2/31‑100 (MQ=255)
                                                                     ccgctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtgtg                                >  1:2096506‑M2/31‑100 (MQ=255)
                                                                     CCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtgtg                                >  2:586139‑M1/1‑100 (MQ=255)
                                                                      CGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTgg                               <  1:550495‑M1/100‑1 (MQ=255)
                                                                       gctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGc                              >  1:187030‑M2/29‑100 (MQ=255)
                                                                       gctggtgccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGc                              >  2:1081786‑M2/29‑100 (MQ=255)
                                                                        CTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCa                             >  1:1227251‑M1/1‑100 (MQ=255)
                                                                        CTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCa                             >  1:1227376‑M1/1‑100 (MQ=255)
                                                                         TGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAg                            >  2:1456678‑M1/1‑100 (MQ=255)
                                                                          GGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAgg                           <  2:2070013‑M1/100‑1 (MQ=255)
                                                                          GGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAgg                           <  2:327714‑M1/100‑1 (MQ=255)
                                                                          GGTACACCATCCGGCACCAGCGGTGAATACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAgg                           <  2:1573860‑M1/100‑1 (MQ=255)
                                                                           GTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGt                          >  2:239749‑M1/1‑100 (MQ=255)
                                                                            TACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGtt                         <  1:2319704‑M1/100‑1 (MQ=255)
                                                                             gccggatggtgtaccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTg                        >  1:2431259‑M2/23‑100 (MQ=255)
                                                                             acacCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTg                        >  1:468855/1‑100 (MQ=255)
                                                                                ccATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGc                     >  1:1154963/1‑100 (MQ=255)
                                                                                 cgatctgCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCt                    <  1:632043/94‑1 (MQ=255)
                                                                                 cATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCt                    <  2:698489/100‑1 (MQ=255)
                                                                                  aTCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGccg                   <  1:1829143/100‑3 (MQ=255)
                                                                                    ccGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGan                 <  1:1363064/100‑2 (MQ=255)
                                                                                     cGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGaca                <  2:790295/100‑1 (MQ=255)
                                                                                     cGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGaca                >  1:1066864/1‑100 (MQ=255)
                                                                                      ggccccagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGacac               <  1:2128635‑M2/87‑1 (MQ=255)
                                                                                      ggCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGacac               >  2:442727/1‑100 (MQ=255)
                                                                                      ggCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGacac               >  2:1019446/1‑100 (MQ=255)
                                                                                      ggCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGaca                >  1:79405/1‑99 (MQ=255)
                                                                                       gCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCtagatcg              >  2:632046/1‑94 (MQ=255)
                                                                                        cACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCCGGTTGAGCTGACACCg             >  1:2341903/1‑100 (MQ=255)
                                                                                           cagcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGttt          <  1:129217‑M2/92‑1 (MQ=255)
                                                                                            agcggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGtttt         >  1:1400659‑M2/8‑100 (MQ=255)
                                                                                              cggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAAGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTcc       >  1:660674‑M2/6‑100 (MQ=255)
                                                                                               ggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCg      <  2:1679961‑M2/96‑1 (MQ=255)
                                                                                               ggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCg      >  2:1451294‑M2/5‑100 (MQ=255)
                                                                                               ggtgACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCg      >  2:1451293‑M2/5‑100 (MQ=255)
                                                                                                   aCTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGacac  <  1:547988/100‑1 (MQ=255)
                                                                                                   aCTACAGTGACGACGAGCTGGCGGTCTACCAGCGCGAAACGACGCAGGCCTTGCAGGATTACCTGCTGTGGCAGGTTGAGCTGACACCGGTTTCCGacac  <  1:2562340/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
CCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACAC  >  NC_000913/3344925‑3345123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.