New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3754860 =	NA (NA)	4 (0.050)	3/164	NT	NA	noncoding (1/82 nt)	REP270 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP270 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	3754890 =	NA (NA)					noncoding (31/82 nt)	REP270 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP270 (repetitive extragenic palindromic) element; contains 2 REP sequences

GTCGCATTGGGTATTCATTGCCTGATGCGACGCTTACGCGTCTTATCATGCCTACGGGAACCTGACCGTAGGCCGGATAAGGCGTACACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3754960‑3754860 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCC  >  NC_000913/3754890‑3754984                                                                                                                                                                                                      GTCGCATTGGGTATTCATTGCCTGATGCGACGCTTACGCGTCTTATCATGCCTACGGGAACCTGACCGTAGGCCGGATAAGGCGTACACGCCGCATCCGG                                                                                                  >  1:45475/1‑100   CGCATTGGGTATTCATTGCCTGATGCGACGCTTACGCGTCTTATCATGCCTACGGGAACCTGACCGTAGGCCGGATAAGGCGTACACGCCGCATCCGGCn                                                                                                <  1:1702803/100‑2                                                                       GGCCGGATAAGGCGTACACGCCGCATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCG                            >  1:1165686/1‑100                                                                       GGCCGGATAAGGCGTACACGCCGCATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCG                            >  2:703637/1‑100                                                                         CCGGATAAGGCGTACACGCCGCATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGAC                          >  1:1329784/1‑100                                                                           GGATAAGGCGTACACGCCGCATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCA                        >  2:1960768/1‑100                                                                                        cgccttcgTCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCA           <  1:577789/92‑1                                                                                                 CCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCC  <  2:7554/100‑1                                                                                                                                                                                                      GTCGCATTGGGTATTCATTGCCTGATGCGACGCTTACGCGTCTTATCATGCCTACGGGAACCTGACCGTAGGCCGGATAAGGCGTACACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3754960‑3754860 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCGACCAGCTTCTTATATCAGAACAGCCC  >  NC_000913/3754890‑3754984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.