New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4249477	NA (NA)	6 (0.070)	5/166	NT	NA	intergenic (+166/‑77)	lamB/malM	maltose outer membrane porin (maltoporin)/maltose regulon periplasmic protein
	?	NC_000913	= 4249481	NA (NA)					intergenic (+170/‑73)	lamB/malM	maltose outer membrane porin (maltoporin)/maltose regulon periplasmic protein

TTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4249376‑4249477 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggggcTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGATAAGA  <  NC_000913/4249481‑4249383                                                                                                                                                                                                           TTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAG                                                                                                         <  1:2197143/98‑1  TGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGG                                                                                                      >  1:1296562/1‑100   GCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGC                                                                                                     <  1:1749005/100‑1   GCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGC                                                                                                     <  1:2236583/100‑1   GCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGC                                                                                                     >  1:953081/1‑100   GCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGC                                                                                                     <  1:1124305/100‑1                GGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCTTTCGCCCCTTTC                                                                                        <  1:1971088/100‑1                 GCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCTTTCGCCCCTTTCA                                                                                       <  2:1320886/100‑1                 GCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCTTTCGCCCCTTTCA                                                                                       <  1:13954/100‑1                                                           GCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGC                                             >  1:482595/1‑100                                                                                     TCATTATCTGAAAGGGGCGAAAGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCG                   >  1:956481/1‑100                                                                                      CATTATCTGAAAGGGGCGAAAGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGT                  >  2:1353409/1‑100                                                                                                  GGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGAT      <  1:663582/100‑1                                                                                                  GGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGAT      <  1:849947/100‑1                                                                                                  GGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGAT      >  2:2325893/1‑100                                                                                                  GGGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGAT      >  2:1819519/1‑100                                                                                                   GGGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGATA     <  1:483973/100‑1                                                                                                    GGCTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGATAA    <  1:1384161/100‑1                                                                                                      CTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGATAAGA  <  2:720886/100‑1                                                                                                                                                                                                           TTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4249376‑4249477 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggggcTTTCGCCCCTTTCAGATAATGACAACCTGTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTTGACAGCCGTTGTAGGCCTGATAAGA  <  NC_000913/4249481‑4249383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.