New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 4618165 = | NA (NA) | 4 (0.050) | 4/164 | NT | 5.7% | noncoding (49/82 nt) | REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | 4618192 = | 66 (0.820) | noncoding (76/82 nt) | REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Rejected: Frequency below cutoff threshold. |
ACCATCACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4618270‑4618165 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGA > NC_000913/4618192‑4618290 ACCATCACGTTTTTTACGTTTTTTTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATCAGGCGGCTTTTGCCGGATGCGTCTACGCCTTA > 2:1856641/1‑100 ACCATCACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTA > 2:1573026/1‑100 ATCACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCC < 1:2176370/100‑1 CACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCCGG < 1:1172748/100‑1 CACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCCGG > 2:724811/1‑100 CACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCCGG > 2:2276089/1‑100 CACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCCGG < 1:1646619/100‑1 CACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCCG > 2:640986/1‑99 ACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCCGGC > 2:76283/1‑100 AAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCCGGCAAAAGCCGCCTCATACTCTTTTCCTCGTGAGGTTACCTTGCTTCTCGCAC > 2:915050/1‑99 CTTTTGCCGGATGCGTCTACGCCTTATCCGGCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAA > 2:1137045/1‑100 TTTTGCCGGATGCGTCTACGCCTTATCCGGCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAA > 2:489835/1‑100 TGCCGGATGCGTCTACGCCTTATCCGGCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACG > 1:1063183/1‑100 TTATCCGGCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGC < 1:489838/100‑1 CCGGCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATG < 1:313481/100‑1 CGGCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGA > 1:2127146/1‑100 CGGCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGA > 2:191274/1‑100 GCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAG < 2:2066949/100‑1 GCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAG > 2:2101380/1‑100 CAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGA > 2:1452360/1‑100 CAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGA < 2:205711/100‑1 ACCATCACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4618270‑4618165 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGA > NC_000913/4618192‑4618290 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |