New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4618165 =NA (NA)4 (0.050) 4/164 NT 5.7% noncoding (49/82 nt) REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4618192 = 66 (0.820)noncoding (76/82 nt) REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Frequency below cutoff threshold.

ACCATCACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4618270‑4618165
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGA  >  NC_000913/4618192‑4618290
                                                                                                                                                                                                             
ACCATCACGTTTTTTACGTTTTTTTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATCAGGCGGCTTTTGCCGGATGCGTCTACGCCTTA                                                                                                           >  2:1856641/1‑100
ACCATCACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTA                                                                                                           >  2:1573026/1‑100
   ATCACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCC                                                                                                        <  1:2176370/100‑1
     CACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCCGG                                                                                                      <  1:1172748/100‑1
     CACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCCGG                                                                                                      >  2:724811/1‑100
     CACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCCGG                                                                                                      >  2:2276089/1‑100
     CACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCCGG                                                                                                      <  1:1646619/100‑1
     CACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCCG                                                                                                       >  2:640986/1‑99
      ACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCCGGC                                                                                                     >  2:76283/1‑100
                                                         AAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCCGGCAAAAGCCGCCTCATACTCTTTTCCTCGTGAGGTTACCTTGCTTCTCGCAC                                                   >  2:915050/1‑99
                                                                          CTTTTGCCGGATGCGTCTACGCCTTATCCGGCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAA                                 >  2:1137045/1‑100
                                                                           TTTTGCCGGATGCGTCTACGCCTTATCCGGCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAA                                >  2:489835/1‑100
                                                                              TGCCGGATGCGTCTACGCCTTATCCGGCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACG                             >  1:1063183/1‑100
                                                                                                 TTATCCGGCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGC          <  1:489838/100‑1
                                                                                                     CCGGCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATG      <  1:313481/100‑1
                                                                                                      CGGCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGA     >  1:2127146/1‑100
                                                                                                      CGGCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGA     >  2:191274/1‑100
                                                                                                        GCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAG   <  2:2066949/100‑1
                                                                                                        GCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAG   >  2:2101380/1‑100
                                                                                                         CAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGA  >  2:1452360/1‑100
                                                                                                         CAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGA  <  2:205711/100‑1
                                                                                                                                                                                                             
ACCATCACGTTTTTTACGAATAATTTCTTGTGCGAGAAACAAGGTAACCTCCCGAGGAAAAGAGTATGAGGCGGCTTTTGCCGGATGCGTCTACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4618270‑4618165
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGA  >  NC_000913/4618192‑4618290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.