New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 632112 =NA (NA)4 (0.070)
+ATTTGCAAATCCAAAGCATTACATTAAGACG		 3/116 NT NA intergenic (+113/‑70) cstA/ybdD carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein
?NC_000913 4344813 = NA (NA)intergenic (+23/+116) melB/yjdF melibiose:sodium symporter/DUF2238 family inner membrane protein

GAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/632152‑632112
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGCCTGATGCGATATGTTTATCAGGCCACGTC  >  NC_000913/4344813‑4344845
                                         |||||||||||||||||||||||||||||||                                 
tgaTGCCGGATGCGGCGTGAATTCCTTATCCGGTCTACAAAATTTGCAAATCCAAAGCATTACATTAAGACGTGGCCTGATGCGATATGTTTATCAGGCC       <  2:2078560/97‑1
 gaTGCCGGATGCGGCGTGAATTCCTTATCCGGTCTACAAAATTTGCAAATCCAAAGCATTACATTAAGACGTGGCCTGATGCGATATGTTTATCAGGCCA      <  1:822536/98‑1
 gaTGCCGGATGCGGCGTGAATTCCTTATCCGGTCTACAAAATTTGCAAATCCAAAGCATTACATTAAGACGTGGCCTGATGCGATATGTTTATCAGGCCA      <  2:1207376/98‑1
     CCGGATGCGGCGTGAATTCCTTATCCGGTCTACAAAATTTGCAAATCCAAAGCATTACATTAAGACGTGGCCTGATGCGATATGTTTATCAGGCCACGTC  <  2:2110824/100‑1
                                         |||||||||||||||||||||||||||||||                                 
GAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/632152‑632112
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGCCTGATGCGATATGTTTATCAGGCCACGTC  >  NC_000913/4344813‑4344845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.