| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2139728 = | NA (NA) | 8 (0.100) | 4/164 | NT | NA | noncoding (27/37 nt) | REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 4229405 | NA (NA) | noncoding (30/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GAATGACTGGGCCGAGCGGAATAAAGATTCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2139831‑2139728‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGACGCTTGACGCGTCTTATCAGGCCTACAGGATTCACAATATTAATACTCGTCCCGTCCTTCATCTTCATCCGGCTGTTCCAGCACACTGTAAGCCA < NC_000913/4229405‑4229307 GAATGACTGGGCCGAGCGGAATAAAGATTCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCC > 2:1099221/1‑100 ATGACTGGGCCGGGCGGAATAAAGATTCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTG < 2:795634/100‑1 TGACTGGGCCGAGCGGAATAAAGATTCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGA < 2:273558/100‑1 CCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATGCGACGCTTTACGCGTCTTATCAGG > 2:2316876/1‑100 CCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATGCGACGCTTTACGCGTCTTATCAGGC < 1:141158/100‑1 CCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATGCGACGCTTTACGCGTCTTATCAGGC < 1:2316897/100‑1 CGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATGCGACGCTTTACGCGTCTTATCAGGCC < 2:1600165/100‑1 CGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATGCGACGCTTTACGCGTCTTATCAGGCC < 1:1490504/100‑1 CGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATGCGACGCTTTACGCGTCTTATCAGGCC < 2:836382/100‑1 ATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGGCACCAGTCCTGTAGGCCTGATGCGACGCTTTACGCGTCTTATCAGGCC < 2:252442/96‑1 TGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAG < 1:1055876/100‑1 GCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAGGATTCACAATATTAATACTCGTCCCGTCCTTCATCTTCATCCGGCTGTTCCAGCACACTGT > 1:828048/1‑100 GCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAGGATTCACAATATTAATACTCGTCCCGTCCTTCATCTTCATCCGGCTGTTCCAGCACACTGT > 2:2073559/1‑100 GCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAGGATTCACAATATTAATACTCGTCCCGTCCTTCATCTTCATCCGGCTGTTCCAGCACACTGT > 1:1800879/1‑100 GCCTGATGCGACGCTTGACGCGGCTTATCAGGCCTACAGGATTCACAATATTAATACTCGTCCCGTCCTTCATCTTCATCCGGTTGTTCCAGCACACTGT > 2:1373426/1‑100 CTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAGGATTCACAATATTAATACTCGTCCCGTCCTTCATCTTCATCCGGCTGTTCCAGCACACTGTAA < 1:2331002/100‑1 TGCGACGCTTGACGCGTCTTATCAGGCCTACAGGATTCACAATATTAATACTCGTCCCGTCCTTCATCTTCATCCGGCTGTTCCAGCACACTGTAAGCCA < 1:2006952/100‑1 GAATGACTGGGCCGAGCGGAATAAAGATTCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2139831‑2139728‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGACGCTTGACGCGTCTTATCAGGCCTACAGGATTCACAATATTAATACTCGTCCCGTCCTTCATCTTCATCCGGCTGTTCCAGCACACTGTAAGCCA < NC_000913/4229405‑4229307 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |