BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2139728 =	NA (NA)	8 (0.100)	4/164	NT	NA	noncoding (27/37 nt)	REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences
*	?	NC_000913	= 4229405	NA (NA)	8 (0.100)	4/164	NT	NA	noncoding (30/70 nt)	REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 128 total aligned reads displayed.

TGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAAC  >  NC_000913/4229307‑4229504

tGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCa                                                                                                     <  1:2006952‑M2/100‑2 (MQ=255)

    ttACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCatcag                                                                                                 <  1:2331002‑M2/100‑6 (MQ=255)

      aCAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCatcaggc                                                                                               >  1:1800879‑M2/1‑93 (MQ=255)

      aCAGTGTGCTGGAACAACCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGCCGCGTCAAGCGTCGCatcaggc                                                                                               >  2:1373426‑M2/1‑93 (MQ=255)

         gtgtGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACt                                                                                            >  1:2165445/1‑100 (MQ=255)

         gtgtGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACt                                                                                            >  1:985422/1‑100 (MQ=255)

          tgtgCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTa                                                                                           <  2:1393042/100‑1 (MQ=255)

           gtgCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTAt                                                                                          <  2:772479/100‑1 (MQ=255)

           gtgCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTAt                                                                                          >  1:2080301/1‑100 (MQ=255)

           gtgCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTAt                                                                                          >  2:1878439/1‑100 (MQ=255)

           gtgCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTAt                                                                                          >  1:1520413/1‑100 (MQ=255)

            tgCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATg                                                                                         >  1:717771/1‑100 (MQ=255)

             gCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGa                                                                                        <  2:1377997/100‑1 (MQ=255)

             gCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGa                                                                                        >  1:1546842/1‑100 (MQ=255)

             gCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGa                                                                                        >  1:1500626/1‑100 (MQ=255)

             gCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGa                                                                                        >  1:1450036/1‑100 (MQ=255)

             gCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGa                                                                                        >  2:356638/1‑100 (MQ=255)

              cTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGaa                                                                                       >  1:1842548/1‑100 (MQ=255)

              cTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGaa                                                                                       <  1:2138527/100‑1 (MQ=255)

                ngAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACa                                                                                     >  2:2070704/2‑100 (MQ=255)

                  aaCAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGGCGCATCAGGCACTATGAACaa                                                                                    >  1:1825950/1‑99 (MQ=255)

                      gCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGc                                                                               <  1:916941/100‑1 (MQ=255)

                      gCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGc                                                                               >  1:1462999/1‑100 (MQ=255)

                         ggATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCgg                                                                            <  1:305409/100‑1 (MQ=255)

                          gatgaagatgaaGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGa                                                                           <  1:1876051/100‑1 (MQ=255)

                          gatgaagatgaaGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGa                                                                           <  1:914971/100‑1 (MQ=255)

                            tgaagatgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑c                                                                        <  2:2032600/100‑1 (MQ=255)

                               agatgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATg                                                                     >  1:16353/1‑100 (MQ=255)

                               agatgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATg                                                                     <  2:604752/100‑1 (MQ=255)

                                 atgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCa                                                                   >  1:1958730/1‑100 (MQ=255)

                                   gaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATc                                                                 >  1:1503148/1‑100 (MQ=255)

                                   gaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATc                                                                 >  2:1991623/1‑100 (MQ=255)

                                     agGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCg                                                               >  2:445720/1‑100 (MQ=255)

                                       gacgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGc                                                             <  1:1340398/100‑1 (MQ=255)

                                       gacgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGc                                                             >  2:391169/1‑100 (MQ=255)

                                        acgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCa                                                            <  1:426394/100‑1 (MQ=255)

                                         cgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATGCATG‑ATCCGGCat                                                           <  1:1029029/100‑2 (MQ=25)

                                         cgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATGCATG‑ATCCGGCat                                                           <  1:1029014/100‑2 (MQ=25)

                                            gacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTc                                                        >  2:1025495/1‑100 (MQ=255)

                                             acgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCa                                                       <  1:1423542/100‑1 (MQ=255)

                                              cgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCAc                                                      >  1:92317/1‑100 (MQ=255)

                                                aGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATGCATG‑ATCCGGCatcttgttc                                                    <  1:380918/100‑9 (MQ=21)

                                                aGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACtt                                                    <  2:1462991/100‑1 (MQ=255)

                                                    ttAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTaaaa                                                >  1:1667919/1‑100 (MQ=255)

                                                    ttAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTaaaa                                                >  2:1200242/1‑100 (MQ=255)

                                                     tAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTaaaaa                                               >  1:779544/1‑100 (MQ=255)

                                                      aaTATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAAc                                              >  1:1147746/1‑100 (MQ=255)

                                                       atatTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACg                                             >  2:1356162/1‑100 (MQ=255)

                                                        tatTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACgg                                            >  2:1415793/1‑100 (MQ=255)

                                                          ttGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGt                                           <  2:1742290/99‑1 (MQ=255)

                                                           tgtgAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGa                                         >  2:1342094/1‑100 (MQ=255)

                                                            gtgAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGAc                                        <  1:1923189/100‑1 (MQ=255)

                                                            gtgAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGAc                                        >  1:1980303/1‑100 (MQ=255)

                                                            gtgAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGAc                                        >  1:2230063/1‑100 (MQ=255)

                                                             tgAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGAcc                                       >  2:1641275/1‑100 (MQ=255)

                                                                aTCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGc                                    <  2:1046734/100‑1 (MQ=255)

                                                                aTCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGc                                    <  2:679254/100‑1 (MQ=255)

                                                                aTCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGc                                    <  1:1931963/100‑1 (MQ=255)

                                                                aTCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGc                                    >  2:1784365/1‑100 (MQ=255)

                                                                 tCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGATCAGCt                                   >  2:2036070/1‑100 (MQ=255)

                                                                  ccTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCtt                                  <  1:387504/100‑1 (MQ=255)

                                                                  ccTGTAGCTCTGATAAGACGCGTCAAGCGGCGCATCAGGCACTATCAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCtt                                  <  2:360009/100‑1 (MQ=38)

                                                                   cTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTc                                 >  2:1643777/1‑100 (MQ=255)

                                                                   cTGTAGGCCTGATAAGACGCGTAAAGCGTCGCatcaggcgtacaggactggtcacctggtaacctacatcttctccagcaacttcttcacatctttgcca                                  <  1:1055876‑M2/100‑69 (MQ=255)

                                                                    tGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTcc                                <  2:967337/100‑1 (MQ=255)

                                                                       aGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGc                             <  1:1200247/100‑1 (MQ=255)

                                                                        ggCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAAGAAGATGCCGGTG‑CATGCATCCGGCTATTCACTTAAAAACGGTGACCAGCTTCCAGCg                            <  2:1310471/100‑1 (MQ=37)

                                                                        ggCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCg                            <  2:1187122/100‑1 (MQ=255)

                                                                        ggCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCg                            >  2:1573588/1‑100 (MQ=255)

                                                                        ggCCTGATAAGACGCGTAAAGCGTCGCatcaggcctacaggactggtgccctggtaacctacatcttctccagcaacttcttcacatctttgccat                                 <  2:252442‑M2/96‑70 (MQ=255)

                                                                        ggCCTGATAAGACGCGTAAAGCGTCGCatcaggcctacaggactggtcacctggtaacctacatcttctccagcaacttcttcacatctttgccattacg                             <  1:1490504‑M2/100‑74 (MQ=255)

                                                                        gcccTGATACGACGCTTCAATCGTCGCACCAGAGACTATTAATAAGATGCCGCCT‑CAGTCATCCGGCAATTCACTTAAAAACGGTGAGCAGGTTCCAGc                             <  2:1240624/97‑1 (MQ=255)

                                                                         gCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCgg                           >  2:681914/1‑100 (MQ=255)

                                                                         gCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCgg                           <  1:1560976/100‑1 (MQ=255)

                                                                         gCCTGATAAGACGCGTAAAGCGTCGCatcaggcctacaggactggtcacctggtaacctacatcttctccagcaacttcttcacatctttgccattacgg                            <  1:2316897‑M2/100‑75 (MQ=255)

                                                                          ccTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGa                          >  1:966751/1‑100 (MQ=255)

                                                                             gATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAAcc                       <  1:1784378/100‑1 (MQ=255)

                                                                             gATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAAcc                       >  2:172959/1‑100 (MQ=255)

                                                                              aTAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCg                      >  1:1571710/1‑100 (MQ=255)

                                                                               tAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGc                     <  1:2070721/100‑1 (MQ=255)

                                                                                aaGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAG‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGct                    <  2:983469/100‑1 (MQ=255)

                                                                                      cgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCa              <  2:2284255/100‑1 (MQ=255)

                                                                                       gTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCAc             >  1:41680/1‑100 (MQ=255)

                                                                                       gTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCAc             <  2:353275/100‑1 (MQ=255)

                                                                                        tCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCAcc            >  2:1045163/1‑100 (MQ=255)

                                                                                         cAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAA‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCa           >  2:1259513/1‑100 (MQ=255)

                                                                                          aaGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAg          <  2:2142681/100‑1 (MQ=255)

                                                                                            gCGTCGCATCAGGCACTATGAACAAGATGGCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGcc        <  2:98109/100‑1 (MQ=255)

                                                                                            gCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGcc        >  1:187657/1‑100 (MQ=255)

                                                                                             cGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCt       <  1:1696085/100‑1 (MQ=255)

                                                                                              gTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCtt      >  1:1721937/1‑100 (MQ=255)

                                                                                               tCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTa     <  1:1180726/100‑1 (MQ=255)

                                                                                               tCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTa     <  1:729845/100‑1 (MQ=255)

                                                                                               tCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTa     <  2:487224/100‑1 (MQ=255)

                                                                                                cGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTaa    <  2:16353/100‑1 (MQ=255)

                                                                                                cGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTaa    <  2:1520404/100‑1 (MQ=255)

                                                                                                  cATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAac  >  1:1895431/1‑100 (MQ=255)

                                                                                                  cATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAac  <  2:2230044/100‑1 (MQ=255)

                                                                                                  cATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAac  <  1:214347/100‑1 (MQ=255)

                                                                                                  cATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAac  <  1:1342101/100‑1 (MQ=255)

TGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAAC  >  NC_000913/4229307‑4229504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.