New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2842423 =NA (NA)4 (0.050) 5/164 NT NA noncoding (1/79 nt) REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 2842453 = NA (NA)noncoding (31/79 nt) REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 129 total aligned reads displayed.

CGCAGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGA  >  NC_000913/2842324‑2842522
                                                                                                   |                                                                                                   
cagggatgttcttgatggggtgaaccagctctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagg                                                                                                     <  1:2114577‑M1/1‑1 (MQ=255)
  gggatgttcttgatggggtgaaccagctctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGcc                                                                                                   <  2:2300460‑M1/3‑1 (MQ=255)
  cAGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGcc                                                                                                   >  2:697947/1‑100 (MQ=255)
   aGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCg                                                                                                  <  1:1844479/100‑1 (MQ=255)
    ggCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCgg                                                                                                 >  1:470012/1‑100 (MQ=255)
    ggCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCgg                                                                                                 >  2:2252586/1‑100 (MQ=255)
    ggCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCgg                                                                                                 <  2:400171/100‑1 (MQ=255)
    gatgttcttgatggggtgaaccagctctgatgccaaatgctagattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCgg                                                                                                 >  2:1651154‑M1/96‑100 (MQ=255)
    gatgttcttgatggggtgaaccagctctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCgg                                                                                                 <  2:1903905‑M1/5‑1 (MQ=255)
    gatgttcttgatggggtgaaccagctctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCgg                                                                                                 >  2:365534‑M1/96‑100 (MQ=255)
     atgttcttgatggggtgaaccagctctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCgg                                                                                                 >  1:504414‑M1/95‑99 (MQ=255)
      tgttcttgatggggtgaaccagctctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCGGAt                                                                                               <  1:1563231‑M1/7‑1 (MQ=255)
      tgttcttgatggggtgaaccagctctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCGGAt                                                                                               <  2:1719644‑M1/7‑1 (MQ=255)
      cAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGAt                                                                                               >  2:53591/1‑100 (MQ=255)
          ggTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATgcgg                                                                                           >  1:848507/1‑100 (MQ=255)
             aCGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGt                                                                                        <  1:1255812/100‑1 (MQ=255)
             aCGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGt                                                                                        >  1:1719656/1‑100 (MQ=255)
              cGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTg                                                                                       >  1:1423085/1‑100 (MQ=255)
              cGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTg                                                                                       >  1:1953386/1‑100 (MQ=255)
               gCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGa                                                                                      <  2:1854159/100‑1 (MQ=255)
               gCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGa                                                                                      <  2:1753341/100‑1 (MQ=255)
                  gACGCGCACGCGTAAGAAATCATTTTTGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAAc                                                                                    <  2:2312582/99‑1 (MQ=255)
                  gACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACg                                                                                   >  1:270118/1‑100 (MQ=255)
                  gACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACg                                                                                   <  2:1659548/100‑1 (MQ=255)
                  gACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGACGCGGCGTGAACg                                                                                   <  1:127116/100‑1 (MQ=255)
                   aCGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGc                                                                                  >  1:226535/1‑100 (MQ=255)
                     gcgcACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCt                                                                                <  1:1748057/100‑1 (MQ=255)
                     gcgcACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCt                                                                                <  2:1025078/100‑1 (MQ=255)
                      cgcACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCtt                                                                               >  1:43595/1‑100 (MQ=255)
                      cgcACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCtt                                                                               >  1:959388/1‑100 (MQ=255)
                      cgcACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCtt                                                                               >  2:1073047/1‑100 (MQ=255)
                      cgcACGAGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCtt                                                                               <  2:226571/100‑1 (MQ=255)
                        cACGCGTAAGGAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGACTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTAt                                                                             >  2:1657414/1‑100 (MQ=255)
                           gcgTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCg                                                                          <  1:1561759/100‑1 (MQ=255)
                            ctctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCGGATGCGGCGTGAACGCCTTATCCgg                                                                         >  1:88953‑M1/72‑100 (MQ=255)
                            cgTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCgg                                                                         >  1:1266924/1‑100 (MQ=255)
                               tgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacacgtagGCCGGATGCGGCGTGAACGCCTTATCCGGCCt                                                                      >  1:1654288‑M1/69‑100 (MQ=255)
                               aaGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt                                                                      <  2:122482/100‑1 (MQ=255)
                               aaGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt                                                                      >  1:218722/1‑100 (MQ=255)
                                aGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                                     >  2:834948/1‑100 (MQ=255)
                                aGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                                     >  1:1294140/1‑100 (MQ=255)
                                 gAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAc                                                                    <  1:2182868/100‑1 (MQ=255)
                                     tCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGt                                                                <  2:1978005/100‑1 (MQ=255)
                                      cATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAt                                                                  >  2:1967010/1‑97 (MQ=255)
                                      cATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTc                                                               >  1:217701/1‑100 (MQ=255)
                                        ttCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGc                                                             <  1:174414/100‑1 (MQ=255)
                                        atgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGc                                                             >  1:2231661‑M1/60‑100 (MQ=255)
                                          cTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCAc                                                           <  1:477609/100‑1 (MQ=255)
                                               ggtATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAAcc                                                      <  1:671911/100‑1 (MQ=255)
                                               ggtATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAAcc                                                      <  1:80998/100‑1 (MQ=255)
                                               ggtATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAAcc                                                      >  2:602424/1‑100 (MQ=255)
                                               ggtATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAAcc                                                      >  2:1040114/1‑100 (MQ=255)
                                                gtATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCa                                                     <  1:9428/100‑1 (MQ=255)
                                                 tataAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCAt                                                    >  2:8120/1‑100 (MQ=255)
                                                   taAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGa                                                  >  1:105466/1‑100 (MQ=255)
                                                    aaaaaaGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGaa                                                 <  2:2086432/100‑1 (MQ=255)
                                                     aaaaaGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAg                                                <  2:1743274/100‑1 (MQ=255)
                                                       aaaGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGc                                              >  2:638477/1‑100 (MQ=255)
                                                         aGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGccc                                            <  2:1603058/100‑1 (MQ=255)
                                                          gTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCg                                           <  2:2045617/100‑1 (MQ=255)
                                                          gTGATTGCCAGTAATGGGGAAGATGTAGAGTATGGAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCg                                           <  1:1967251/100‑1 (MQ=255)
                                                            gATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCAGGGCTACATGTCGCACCCACCATGCAGGCCCg                                           >  2:799176/1‑98 (MQ=37)
                                                             aTTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATa                                        <  2:1732646/100‑1 (MQ=255)
                                                             aTTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACATGTCGCACGAACCATGAAGGCCGGa                                          >  1:2096162/1‑98 (MQ=255)
                                                               tGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAag                                      <  2:1348107/100‑1 (MQ=255)
                                                                gCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagc                                     >  2:1467131/1‑100 (MQ=255)
                                                                gCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagc                                     >  2:1012212/1‑100 (MQ=255)
                                                                gCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagc                                     >  1:391878/1‑100 (MQ=255)
                                                                gCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagc                                     >  1:2061527/1‑100 (MQ=255)
                                                                  cAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagcgc                                   <  2:270117/100‑1 (MQ=255)
                                                                     tAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagcgcagc                                <  2:199267/100‑1 (MQ=255)
                                                                      aaTGGGGCAGATTTAGAGTAGGTAACAGTGCCTGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagcgcagcg                               <  2:1264675/100‑1 (MQ=255)
                                                                         ggggAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATACGGCCTACATGTCGCACGAACAATGAAGGCCCGATAAGCGCAGCGCAt                            >  2:2114559/1‑100 (MQ=255)
                                                                          gggAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGACTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATc                           <  1:1383706/100‑1 (MQ=255)
                                                                           ggAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCg                          >  1:1711966/1‑100 (MQ=255)
                                                                           ggAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCg                          >  1:301666/1‑100 (MQ=255)
                                                                           ggAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGACTACGTGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCg                          >  2:602426/1‑100 (MQ=255)
                                                                           ggAAGATTTAGAGTAGGTAACAGTGCCGGATGAGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCg                          >  1:2233611/1‑100 (MQ=255)
                                                                            gAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCgg                         <  1:654570/100‑1 (MQ=255)
                                                                              aGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGc                       >  1:1189455/1‑100 (MQ=255)
                                                                                aTTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCaa                     >  1:2300481/1‑100 (MQ=255)
                                                                                 tttAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAAt                    <  2:590788/100‑1 (MQ=255)
                                                                                 tttAGAGTAGGTAACAGTGCCGGATGAGGCGTGAACACCTTATCCGGACTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCAACGGGCCAt                    >  2:1635320/1‑100 (MQ=255)
                                                                                  ttAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAAtt                   <  1:1958568/100‑1 (MQ=255)
                                                                                   tAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAAttt                  <  2:730026/100‑1 (MQ=255)
                                                                                    agagTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTa                 <  1:533995/100‑1 (MQ=255)
                                                                                    agagTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTa                 >  1:299017/1‑100 (MQ=255)
                                                                                    agagTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTa                 <  2:1876697/100‑1 (MQ=255)
                                                                                      agTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAg                >  2:1633905/1‑99 (MQ=255)
                                                                                      agTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGc               <  1:1219043/100‑1 (MQ=255)
                                                                                          ggTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCAttt           >  2:2327002/1‑100 (MQ=255)
                                                                                          ggTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCAttt           >  1:1908032/1‑100 (MQ=255)
                                                                                          ggTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCAttt           >  2:1013915/1‑100 (MQ=255)
                                                                                           gTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTg          >  1:382428/1‑100 (MQ=255)
                                                                                              aCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCa       <  1:733619/100‑1 (MQ=255)
                                                                                                 agGCCGGATAAGGCGTTCACGCCGCATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCa    <  2:1337314‑M1/98‑1 (MQ=255)
                                                                                                  tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCag   >  1:1976891/1‑100 (MQ=255)
                                                                                                  gGCCGGATAAGGCGTTCACGCCGCATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCa    <  1:588198‑M1/98‑1 (MQ=255)
                                                                                                   GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACTATGAAGGCCCGTGAAGCGCAGCGCATCGTGCGATTTAGCATTCGGCATCag   >  2:1370483‑M1/1‑99 (MQ=255)
                                                                                                   GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCaga  >  2:1266919‑M1/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
CGCAGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGA  >  NC_000913/2842324‑2842522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.