| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 3,596,220 | (TCA)3→2 | coding (182‑184/927 nt) | livH ← | branched‑chain amino acid ABC transporter permease |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3596215 = | 2 (0.020) | 85 (1.010) | 64/182 | 0.2 | 97.8% | coding (189/927 nt) | livH | branched‑chain amino acid ABC transporter permease |
| ? | NC_000913 | = 3596211 | 2 (0.020) | coding (193/927 nt) | livH | branched‑chain amino acid ABC transporter permease | |||||
TAAGCCACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCCATCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATAATGCCGTAAACCATG > NC_000913/3596117‑3596314 | cggtaagccacccgttcgatactccagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccca < 2:177231‑M1/2‑1 (MQ=255)cggtaagccacccgttcgatactccagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccca > 2:1533816‑M1/99‑100 (MQ=255) taagccacccgttcgatactccagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgcccatta < 2:1562242‑M1/5‑3 (MQ=255) gccacccgttcgatactccagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcacccagccggtatcaatgccCatcatc < 2:798703‑M1/7‑1 (MQ=255) cccgttcgatactccagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAgcgc > 1:2061249‑M1/89‑100 (MQ=255) cgttcgatactccagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCgcgg > 2:515526‑M1/87‑100 (MQ=255) cgttcgatactccagccgtaggcgccggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCgcgg < 2:2127753‑M1/14‑1 (MQ=255) ttcgatactccagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCgcggcg > 1:1913410‑M1/85‑100 (MQ=255) tcgatactccagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCga > 2:2223867‑M1/84‑100 (MQ=255) cgatactccagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCgat < 2:209207‑M1/18‑1 (MQ=255) cgatactccagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCgat < 2:1579259‑M1/18‑1 (MQ=255) cgatactccagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCgat < 1:1635862‑M1/18‑1 (MQ=255) gatactccagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCgatg < 1:1927685‑M1/19‑1 (MQ=255) actccagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATc > 1:708909‑M1/79‑100 (MQ=255) actccagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATc > 2:534884‑M1/79‑100 (MQ=255) ctccagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGgcgatgaac < 1:397405‑M1/22‑3 (MQ=255) ctccagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCa > 2:1688310‑M1/78‑100 (MQ=255) ctccagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCa < 2:556694‑M1/23‑1 (MQ=255) ctccagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCa < 2:1821702‑M1/23‑1 (MQ=255) tccagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCAt > 1:906171‑M1/77‑100 (MQ=255) cagccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATaa < 1:1418319‑M1/26‑1 (MQ=255) ccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATg > 1:230632‑M1/72‑100 (MQ=255) ccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATg > 1:1007966‑M1/72‑100 (MQ=255) ccgtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATg > 1:164901‑M1/72‑100 (MQ=255) gtaggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATgag > 2:1083870‑M1/70‑100 (MQ=255) taggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATgaga > 1:2011788‑M1/69‑100 (MQ=255) aggcgctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGAc > 2:1963741‑M1/68‑100 (MQ=255) cgctggcaatgacgattgtgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTa > 2:967955‑M1/65‑100 (MQ=255) ctggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGc < 1:190123‑M1/38‑1 (MQ=255) tggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCt < 2:1920420‑M1/39‑1 (MQ=255) ggcaatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTg < 1:640749‑M1/40‑1 (MQ=255) ggaaaagacgatcgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTg > 1:1965485‑M1/61‑100 (MQ=255) caatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAGATGAGACGTAGCTGcc < 1:1306775‑M1/42‑1 (MQ=255) caatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGcc > 1:209207‑M1/59‑100 (MQ=255) caatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGcc < 2:1988043‑M1/42‑1 (MQ=255) aatgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCa < 2:338163‑M1/43‑1 (MQ=255) atgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCaa > 1:1481043‑M1/57‑100 (MQ=255) atgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCaa < 2:1906828‑M1/44‑1 (MQ=255) tgacgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAAt > 1:627448‑M1/56‑100 (MQ=255) cGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCCATCAGCATCAGCGCGGCGATGATCATAAATGAGACGTAGCGGCCAAt > 2:1215064/1‑100 (MQ=255) acgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCa > 1:1012419‑M1/54‑100 (MQ=255) acgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCa > 1:1626031‑M1/54‑100 (MQ=255) cgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCat > 1:1625844‑M1/53‑100 (MQ=255) cgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCat > 2:1818653‑M1/53‑100 (MQ=255) cgattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCat < 2:1818086‑M1/48‑1 (MQ=255) gattgcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCata > 2:1559947‑M1/52‑100 (MQ=255) gattgcgccaacgaatcccgcagctaccagcagccagcaggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCata > 1:1562234‑M1/52‑100 (MQ=255) gcgccgatgaaacccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATCATCATAAATGAGACGTAGCTGCCAATCATATaaa < 1:1171802‑M1/53‑1 (MQ=255) gcgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGAAGATCATAAATGAGACGTAACTGCCAATCATATaaa < 1:1304118‑M1/53‑1 (MQ=255) cgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAAc < 2:771664‑M1/54‑1 (MQ=255) cgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAAc < 2:153301‑M1/54‑1 (MQ=255) cgccgacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAAc < 2:1589030‑M1/54‑1 (MQ=255) gacgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCg > 1:1906818‑M1/43‑100 (MQ=255) cgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCg < 1:598204‑M1/58‑1 (MQ=255) cgaatcccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGcc < 2:810460‑M1/60‑1 (MQ=255) cccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTggg > 1:962076‑M1/36‑100 (MQ=255) cccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTggg > 2:1899685‑M1/36‑100 (MQ=255) ccgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGc < 2:1324985‑M1/66‑1 (MQ=255) cgcagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCg > 1:338162‑M1/34‑100 (MQ=255) cagctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCg < 1:224536‑M1/67‑1 (MQ=255) gctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGt > 2:787284‑M1/30‑100 (MQ=255) gctaccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGt < 2:780678‑M1/71‑1 (MQ=255) taccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTg < 1:805775‑M1/73‑1 (MQ=255) accagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGa > 1:314647‑M1/27‑100 (MQ=255) accagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGa > 1:1280459‑M1/27‑100 (MQ=255) gcggccagccGGTATCAAGGCC‑‑‑CAGCGTCAGCGCGGCGATGATCATGGATGAGACGTAGGTGCCAATCATATAAGCCTCGCCGTGGGCGAAGtt < 1:1821692/91‑1 (MQ=255) ccagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGAt > 2:1079629‑M1/26‑100 (MQ=255) cagcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATc > 1:2077986‑M1/25‑100 (MQ=255) agcagccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCa < 1:1840037‑M1/77‑1 (MQ=255) agccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGc < 2:1605648‑M1/80‑1 (MQ=255) gccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGcc > 1:1605639‑M1/20‑100 (MQ=255) gccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGcc > 1:652686‑M1/20‑100 (MQ=255) gccagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGcc < 2:1809509‑M1/81‑1 (MQ=255) cagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGa < 2:726925‑M1/83‑1 (MQ=255) cagccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGa < 2:714086‑M1/83‑1 (MQ=255) agccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGAt < 2:1795377‑M1/84‑1 (MQ=255) gccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATa < 2:614591‑M1/85‑1 (MQ=255) ccggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATaa > 1:1920410‑M1/15‑100 (MQ=255) cggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATAAt < 2:1989818‑M1/87‑1 (MQ=255) cggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATAAt > 1:1324983‑M1/14‑100 (MQ=255) ggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATAATg > 1:177231‑M1/13‑100 (MQ=255) ggtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATAATg < 2:357941‑M1/88‑1 (MQ=255) ggtatcaatgccCATAATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCTAATCATATAAACCTCGACGTGGGCGAAGATGATCAt > 1:675212‑M1/13‑90 (MQ=255) gtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATAATg > 2:193503‑M1/12‑99 (MQ=255) gtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATAATGc > 2:1145969‑M1/12‑100 (MQ=255) gtatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATAATGc > 2:2148372‑M1/12‑100 (MQ=255) tatcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATAATGcc < 1:384628‑M1/90‑1 (MQ=255) atcaatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATAATGCCg > 2:397406‑M1/10‑100 (MQ=255) aatgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATAATGCCGTaa < 2:177849‑M1/94‑1 (MQ=255) tgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATAATGCCGTAAAc < 1:1758644‑M1/96‑1 (MQ=255) tgccCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATAATGCCGTAAAc > 2:1622671‑M1/5‑100 (MQ=255) CATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATAATGCCGTAAACCATg > 2:2138079‑M1/1‑100 (MQ=255) | TAAGCCACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCCATCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATAATGCCGTAAACCATG > NC_000913/3596117‑3596314 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |