| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 3,596,220 | (TCA)3→2 | coding (182‑184/927 nt) | livH ← | branched‑chain amino acid ABC transporter permease |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3596215 = | 2 (0.020) | 85 (1.010) | 64/182 | 0.2 | 97.8% | coding (189/927 nt) | livH | branched‑chain amino acid ABC transporter permease |
| ? | NC_000913 | = 3596211 | 2 (0.020) | coding (193/927 nt) | livH | branched‑chain amino acid ABC transporter permease | |||||
CGGTAAGCCACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCCATCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATAATGCCGTA > NC_000913/3596114‑3596307 | cGGTAAGCCACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCca > 2:1533816‑M2/1‑98 (MQ=255)cGGTAAGCCACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCca < 2:177231‑M2/100‑3 (MQ=255) tAAGCCACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatta < 2:1562242‑M2/100‑6 (MQ=255) gCCACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCACCCAGCCGGTATCAATGCCcatcatc < 2:798703‑M2/99‑8 (MQ=255) cccGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgc > 1:2061249‑M2/1‑88 (MQ=255) cGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcgg > 2:515526‑M2/1‑86 (MQ=255) cGTTCGATACTCCAGCCGTAGGCGCCGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcgg < 2:2127753‑M2/100‑15 (MQ=255) ttCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcg > 1:1913410‑M2/1‑84 (MQ=255) tCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcga > 2:2223867‑M2/1‑83 (MQ=255) cGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgat < 2:209207‑M2/100‑19 (MQ=255) cGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgat < 1:1635862‑M2/100‑19 (MQ=255) cGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgat < 2:1579259‑M2/100‑19 (MQ=255) gATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatg < 1:1927685‑M2/100‑20 (MQ=255) aCTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatc > 1:708909‑M2/1‑78 (MQ=255) aCTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatc > 2:534884‑M2/1‑78 (MQ=255) cTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatca < 2:1821702‑M2/100‑24 (MQ=255) cTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatca > 2:1688310‑M2/1‑77 (MQ=255) cTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatca < 2:556694‑M2/100‑24 (MQ=255) cTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgaac < 1:397405‑M2/99‑23 (MQ=255) tCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcat > 1:906171‑M2/1‑76 (MQ=255) cAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataa < 1:1418319‑M2/100‑27 (MQ=255) ccGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatg > 1:164901‑M2/1‑71 (MQ=255) ccGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatg > 1:230632‑M2/1‑71 (MQ=255) ccGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatg > 1:1007966‑M2/1‑71 (MQ=255) gTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgag > 2:1083870‑M2/1‑69 (MQ=255) tAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgaga > 1:2011788‑M2/1‑68 (MQ=255) aGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagac > 2:1963741‑M2/1‑67 (MQ=255) cgcTGGCAATGACGATTGTGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgta > 2:967955‑M2/1‑64 (MQ=255) cTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagc < 1:190123‑M2/100‑39 (MQ=255) tGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagct < 2:1920420‑M2/100‑40 (MQ=255) ggCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctg < 1:640749‑M2/100‑41 (MQ=255) ggAAAAGACGATCGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctg > 1:1965485‑M2/1‑60 (MQ=255) cAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcatagatgagacgtagctgcc < 1:1306775‑M2/100‑43 (MQ=255) cAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgcc > 1:209207‑M2/1‑58 (MQ=255) cAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgcc < 2:1988043‑M2/100‑43 (MQ=255) aaTGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgcca < 2:338163‑M2/100‑44 (MQ=255) aTGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaa > 1:1481043‑M2/1‑56 (MQ=255) aTGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaa < 2:1906828‑M2/100‑45 (MQ=255) tGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaat > 1:627448‑M2/1‑55 (MQ=255) aCGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatca > 1:1626031‑M2/1‑53 (MQ=255) aCGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatca > 1:1012419‑M2/1‑53 (MQ=255) cGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcat < 2:1818086‑M2/100‑49 (MQ=255) cGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcat > 2:1818653‑M2/1‑52 (MQ=255) cGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcat > 1:1625844‑M2/1‑52 (MQ=255) cGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCCATCAGCATCAGCGCGGCGATGATCATAAATGAGACGTAGCGGCCAAt > 2:1215064/1‑100 (MQ=255) gATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcata > 2:1559947‑M2/1‑51 (MQ=255) gATTGCGCCAACGAATCCCGCAGCTACCAGCAGCCAGCAGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcata > 1:1562234‑M2/1‑51 (MQ=255) gcgcCGATGAAACCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatcatcataaatgagacgtagctgccaatcatataaa < 1:1171802‑M2/100‑54 (MQ=255) gcgcCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgaagatcataaatgagacgtaactgccaatcatataaa < 1:1304118‑M2/100‑54 (MQ=255) cgcCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaac < 2:153301‑M2/100‑55 (MQ=255) cgcCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaac < 2:1589030‑M2/100‑55 (MQ=255) cgcCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaac < 2:771664‑M2/100‑55 (MQ=255) gacgaATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcg > 1:1906818‑M2/1‑42 (MQ=255) cgaATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgcc < 2:810460‑M2/100‑61 (MQ=255) cgaATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcg < 1:598204‑M2/98‑59 (MQ=255) cccGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtggg > 2:1899685‑M2/1‑35 (MQ=255) cccGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtggg > 1:962076‑M2/1‑35 (MQ=255) ccGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggc < 2:1324985‑M2/100‑67 (MQ=255) cGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcg > 1:338162‑M2/1‑33 (MQ=255) cAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcg < 1:224536‑M2/98‑68 (MQ=255) gCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagt > 2:787284‑M2/1‑29 (MQ=255) gCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagt < 2:780678‑M2/100‑72 (MQ=255) tACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttg < 1:805775‑M2/100‑74 (MQ=255) aCCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttga > 1:314647‑M2/1‑26 (MQ=255) aCCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttga > 1:1280459‑M2/1‑26 (MQ=255) ccAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgat > 2:1079629‑M2/1‑25 (MQ=255) cagcagCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatc > 1:2077986‑M2/1‑24 (MQ=255) agcagcCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatca < 1:1840037‑M2/100‑78 (MQ=255) gcggccagccGGTATCAAGGCC‑‑‑CAGCGTCAGCGCGGCGATGATCATGGATGAGACGTAGGTGCCAATCATATAAGCCTCGCCGTGGGCGAAGtt < 1:1821692/91‑1 (MQ=255) agccagccGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgc < 2:1605648‑M2/100‑81 (MQ=255) gccagccGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgcc < 2:1809509‑M2/100‑82 (MQ=255) gccagccGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgcc > 1:652686‑M2/1‑19 (MQ=255) gccagccGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgcc > 1:1605639‑M2/1‑19 (MQ=255) cagccGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccga < 2:726925‑M2/100‑84 (MQ=255) cagccGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccga < 2:714086‑M2/100‑84 (MQ=255) agccGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgat < 2:1795377‑M2/100‑85 (MQ=255) gccGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgata < 2:614591‑M2/100‑86 (MQ=255) ccGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataa > 1:1920410‑M2/1‑14 (MQ=255) cGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataat < 2:1989818‑M2/100‑88 (MQ=255) cGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataat > 1:1324983‑M2/1‑13 (MQ=255) ggTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatg < 2:357941‑M2/100‑89 (MQ=255) ggTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatg > 1:177231‑M2/1‑12 (MQ=255) ggTATCAATGCCcataatcagcgcggcgatgatcataaatgagacgtagctgctaatcatataaacctcgacgtgggcgaagatgatcat > 1:675212‑M2/1‑12 (MQ=255) gTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatgc > 2:2148372‑M2/1‑11 (MQ=255) gTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatgc > 2:1145969‑M2/1‑11 (MQ=255) gTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatg > 2:193503‑M2/1‑11 (MQ=255) tATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatgcc < 1:384628‑M2/100‑91 (MQ=255) aTCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatgccg > 2:397406‑M2/1‑9 (MQ=255) aaTGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatgccgtaa < 2:177849‑M2/100‑95 (MQ=255) tGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatgccgtaaac > 2:1622671‑M2/1‑4 (MQ=255) tGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatgccgtaaac < 1:1758644‑M2/100‑97 (MQ=255) | CGGTAAGCCACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCCATCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATAATGCCGTA > NC_000913/3596114‑3596307 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |