New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 375319	NA (NA)	5 (0.070) +CTACAAATTCCCGCGCCAT	4/160	10.8	7.5%	noncoding (390/436 nt)	REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences	REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences
	?	NC_000913	508782 =	76 (0.830)					noncoding (201/236 nt)	REP48 (repetitive extragenic palindromic) element; contains 5 REP sequences	REP48 (repetitive extragenic palindromic) element; contains 5 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

GTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCC  >  NC_000913/508683‑508881                                                                                                    |                                                                                                    gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAAc                                                                                                     <  2:1011380/100‑1 (MQ=255) gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAAc                                                                                                     >  1:1655328/1‑100 (MQ=255)    tgCCGGATGCGGCGTAAACGCCTTATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCg                                                                                                   >  2:1985973/2‑99 (MQ=11)    ggCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGt                                                                                                  >  1:693937/1‑100 (MQ=255)       cGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAgg                                                                                               <  2:1983409/100‑1 (MQ=255)         gATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGccc                                                                                             >  1:430590/1‑100 (MQ=255)          aTAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCg                                                                                            >  1:224372/1‑100 (MQ=255)          aTAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCg                                                                                            <  2:2114069/100‑1 (MQ=40)           tAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCgg                                                                                           >  1:2053073/1‑100 (MQ=255)             aGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGAt                                                                                         >  2:2093146/1‑100 (MQ=255)             aGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGAt                                                                                         >  2:269700/1‑100 (MQ=255)               gCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATan                                                                                       <  2:1711533/100‑2 (MQ=255)                cgcttACGCCGCATCCGGCACCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGcc                                                                                             <  1:1572026/90‑1 (MQ=255)                cGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAg                                                                                      >  2:1622673/1‑100 (MQ=255)                 gTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAgg                                                                                     <  2:1070468/100‑1 (MQ=255)                   ttACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCg                                                                                   >  1:2173897/1‑100 (MQ=40)                    tACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGt                                                                                  >  1:1989189/1‑100 (MQ=38)                    tACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGt                                                                                  <  2:295934/100‑1 (MQ=40)                    tACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGt                                                                                  <  2:590160/100‑1 (MQ=40)                    tACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGt                                                                                  <  1:1608218/100‑1 (MQ=38)                     aCGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGtt                                                                                 <  1:585798/100‑1 (MQ=38)                      cgccgcATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGttt                                                                                <  2:1322951/100‑1 (MQ=38)                       gccgcATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTa                                                                               >  2:421502/1‑100 (MQ=38)                       gccgcATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTa                                                                               >  1:678854/1‑100 (MQ=38)                          gcatccggcatccgAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgc                                                                            <  2:678855/100‑1 (MQ=38)                            atccggcatccgAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgccg                                                                          <  2:1956094/100‑1 (MQ=38)                               cggcagccgAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCAt                                                                       >  2:741000/1‑100 (MQ=255)                                    tccgAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAACCCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                  <  1:1622664/100‑1 (MQ=38)                                    tccgAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                  >  1:1270074/1‑100 (MQ=38)                                    tccgAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACATGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                  <  1:1241725/100‑1 (MQ=18)                                      cgAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAg                                                                >  1:759948/1‑100 (MQ=40)                                      cgAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAg                                                                >  2:2088602/1‑100 (MQ=40)                                          cACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGCCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCAt                                                            >  1:1190170/1‑100 (MQ=255)                                            ccATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGc                                                          >  2:476573/1‑100 (MQ=255)                                               ttGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTc                                                       >  2:122860/1‑100 (MQ=255)                                               ttGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTc                                                       >  2:122593/1‑100 (MQ=255)                                               ttGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTc                                                       <  1:531159/100‑1 (MQ=255)                                                 gtcTGATAAGACGCGTTAGCGTCGCATCAGGCCTACAAATTCTCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGctggga                                                     <  2:917834/98‑6 (MQ=11)                                                 gCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGa                                                     >  2:293319/1‑100 (MQ=255)                                                   cTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATg                                                   <  2:238452/100‑1 (MQ=255)                                                    tGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGc                                                  <  1:2076621/100‑1 (MQ=255)                                                    tGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGc                                                  <  2:2227744/100‑1 (MQ=255)                                                         cGACGCTTACGCGTCTTATCAGGCCTACAAACCAGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCTCATCCGGCAGTCATGCGTCGATGCCAAAt                                             >  1:1338012/1‑100 (MQ=255)                                                          gACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATg                                            <  2:2141169/100‑1 (MQ=255)                                                           aCGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATgc                                           <  1:2002210/100‑1 (MQ=255)                                                            cGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATgcg                                          <  2:1325599/100‑1 (MQ=255)                                                              cTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGcc                                        <  1:1747995/100‑1 (MQ=255)                                                                tACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCAc                                      <  1:797048/100‑1 (MQ=255)                                                                tACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCAc                                      >  1:2186768/1‑100 (MQ=255)                                                                tACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCAc                                      >  1:71311/1‑100 (MQ=255)                                                                 aCGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCAcc                                     >  2:1385771/1‑100 (MQ=255)                                                                    cgTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTa                                  >  1:413022/1‑100 (MQ=255)                                                                      tCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTaan                                <  1:62134/100‑2 (MQ=255)                                                                      tCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTaaa                                <  2:521986/100‑1 (MQ=255)                                                                         tATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAagca                             >  2:878725/1‑100 (MQ=255)                                                                           tCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAagca                             <  1:366457/98‑1 (MQ=255)                                                                            cAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAgcg                          >  1:630033/1‑100 (MQ=255)                                                                            cAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAgcg                          <  2:654788/100‑1 (MQ=255)                                                                             aGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAgcgc                         >  1:1398918/1‑100 (MQ=255)                                                                              tccgatctaaCCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCa                        <  1:1683373/92‑1 (MQ=255)                                                                              ggCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCa                        <  2:2178171/100‑1 (MQ=255)                                                                                ccTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATc                      >  1:71714/1‑100 (MQ=255)                                                                                  tACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCg                    <  2:430591/100‑1 (MQ=255)                                                                                  tACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCg                    >  1:292985/1‑100 (MQ=255)                                                                                   aCAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGc                   >  1:1876157/1‑100 (MQ=255)                                                                                    cAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCa                  >  1:528890/1‑100 (MQ=255)                                                                                     aaaCCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCaa                 <  2:1655337/100‑1 (MQ=255)                                                                                      aaCCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCaagatcgga                >  2:1683382/1‑92 (MQ=255)                                                                                      aaCCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAat                >  1:2117468/1‑100 (MQ=255)                                                                                       aCCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAatg               <  2:1728565/100‑1 (MQ=255)                                                                                        ccTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCaan                <  2:1196625/98‑2 (MQ=255)                                                                                        ccTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAatga              >  1:1068554/1‑100 (MQ=255)                                                                                        ccTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAatg               <  1:2093134/99‑1 (MQ=255)                                                                                            tgCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTa          >  2:815372/1‑100 (MQ=255)                                                                                                   aCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTc   <  2:506001/100‑1 (MQ=255)                                                                                                   aCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTc   >  2:862394/1‑100 (MQ=255)                                                                                                   aCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTc   <  2:1270076/100‑1 (MQ=255)                                                                                                    ccGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTcc  >  2:759564/1‑100 (MQ=255)                                                                                                    ccGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTcc  >  2:846302/1‑100 (MQ=255)                                                                                                    |                                                                                                    GTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCC  >  NC_000913/508683‑508881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.