New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3547940	NA (NA)	3 (0.030)	3/164	NT	NA	noncoding (54/87 nt)	REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 3547973	NA (NA)					noncoding (87/87 nt)	REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences

GATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3547874‑3547940 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAATCA  <  NC_000913/3547973‑3547868                                                                                                                                                                               GATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATGCGATGCTTGACGCGTCTTATCCGGC                                                                           <  1:858389/100‑1  ATAACACTGACTGCCGGATGCGGCGTGACCGCCTTAGCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATGCGATGCTTGACGCGTCTTATCCGGCC                                                                          <  1:2020861/100‑1   TAACACTGACTGCCGGTTGCTGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCT                                                                         <  1:565765/100‑1                                                                    GCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATC        <  1:2737978/100‑1                                                                    GCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATC        <  1:656661/100‑1                                                                    GCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATC        <  2:2810632/100‑1                                                                     CCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCA       >  1:1179703/1‑100                                                                     CCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCA       <  1:2155347/100‑1                                                                     CCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCA       <  2:686704/100‑1                                                                       GGATGCGCTGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAA     >  2:1600980/1‑100                                                                       GGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAA     <  2:1570705/100‑1                                                                         ATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAATC   <  2:517776/100‑1                                                                          TGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAATCA  <  1:855947/100‑1                                                                                                                                                                               GATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3547874‑3547940 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGTCAGTGTTATCAAATCA  <  NC_000913/3547973‑3547868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.