New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	361212 =	NA (NA)	7 (0.070)	7/162	NT	NA	noncoding (5/29 nt)	REP29 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP29 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	361237 =	NA (NA)					intergenic (+91/+12)	cynX/lacA	putative cyanate transporter/thiogalactoside acetyltransferase

TATTCGCGAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/361318‑361212 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatcaggcAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTCGCGAATAACCCGACAAGGAACGCC  >  NC_000913/361237‑361335                                                                                                                                                                                                                 TATTCGAGAAATAAACGACCGGGATAAGCTCTATTATTTAAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTT                                                                                                            <  1:1836361/100‑1  ATTCGCGAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTA                                                                                                           <  2:3032861/100‑1  ATTCGCGAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTA                                                                                                           <  1:1719706/100‑1  ATTCGCGAAATAAACGACCGGAATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTA                                                                                                           <  2:629826/100‑1    TCGCGAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTATC                                                                                                         <  2:65964/100‑1    TCGCGAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTATC                                                                                                         <  2:1935152/100‑1    TCGCGAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTATC                                                                                                         <  2:1443600/100‑1     CGCGAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTATCA                                                                                                        >  1:703086/1‑100     CGCGAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTATCA                                                                                                        >  1:347343/1‑100     CGCGAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTATCA                                                                                                        >  2:2261270/1‑100     CGCGAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTATCA                                                                                                        <  2:2323034/100‑1     CGCGAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTATCA                                                                                                        >  1:820644/1‑100      GCGAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTATCAG                                                                                                       >  1:1774182/1‑100      GCGAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTATCAG                                                                                                       <  1:1562489/100‑1      GCGAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTATCAG                                                                                                       <  2:2002149/100‑1       CGAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTATCAGG                                                                                                      >  2:1800335/1‑100       CGAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTATCAGG                                                                                                      >  2:1008791/1‑100       CGAAAGAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTAATACGCTGC‑GCTTATCA                                                                                                        <  1:1471283/98‑1        GAAATAAACGACCGGGATAAGCCCTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTATCAGGC                                                                                                     >  2:1379458/1‑100        GAAATAAACGACCGGGATAAGCACTATTATTTGAAAGATTATAAAGTTGAATCGTCAGGTTAAATTATAAAAATTGCCTTATACGCTGC‑GCTTATCAGG                                                                                                      >  1:1028540/1‑99        GAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTATCAGGC                                                                                                     <  1:2261257/100‑1        GAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTATCAGGC                                                                                                     >  2:2448354/1‑100        GAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTATCAGGC                                                                                                     <  2:2934858/100‑1           ATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATAAGC‑GCAGCGTATCAGGCAAn                                                                                                  <  1:821229/100‑2           ATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATAAGC‑GCAGCGTATCAGGCAAT                                                                                                  <  1:1705125/100‑1                 GACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATAAGC‑GCAGCGTATCAGGCAATTTTTAT                                                                                            <  2:2116887/100‑1                 GACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAAACGTCAGTTTAAATTATAAAAATTGCCTGATAAGCGCA‑GCGTATCAGGCAATTTTTAT                                                                                            <  1:448907/100‑1                    CGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATAAGC‑GCAGCGTATCAGGCAATTTTTATA                                                                                           <  1:1389172/98‑1                                                                                   GCCTGATACGCTGC‑GCTTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTC                          >  1:194817/1‑100                                                                                    CCTGATACGCTGC‑GCTTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTCG                         <  2:821234/100‑1                                                                                      TGATACGCTGC‑GCTTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTttc                        >  1:2125763/1‑96                                                                                           CGCTGC‑GCTTATCAGGCAATTTTTATAATTTGAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTCGCGAATAA                  >  2:2598264/1‑100                                                                                                     TATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTCGCGAATAACCCGACAAG         <  1:657957/100‑1                                                                                                     TATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTCGCGAATAACCCGACAAG         >  2:1847603/1‑100                                                                                                     TATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTCGCGAATAACCCGACAAG         <  1:2629116/100‑1                                                                                                     TATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTCGCGAATAACCCGACAAG         >  1:2191047/1‑100                                                                                                      ATCAGGCAATTTTTATAATTTTAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTCGCGAATAACCCGACAAGG        >  1:386475/1‑100                                                                                                       TCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATATTGCTTATCCCGGTCGTTTATTTCGAGAATAACCCGACAAGGA       >  1:1298206/1‑100                                                                                                       TCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTCGCGAATAACCCGACAAGGA       <  1:2841773/100‑1                                                                                                        CAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTCGCGAATAACCCGACAAGGAA      >  1:1176883/1‑100                                                                                                          GGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGTTCGTTTATTTCGCGAATAACCCGACAAGGAACG    >  1:1212527/1‑100                                                                                                          GGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTCGCGAATAACCCGACAAGGAACG    >  2:2275401/1‑100                                                                                                          GGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTCGCGAATAACCCGACAAGGAACG    >  1:1447503/1‑100                                                                                                          GGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTCGCGAATAACCCGACAAGGAACG    >  2:636835/1‑100                                                                                                          GGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTCGCGAATAACCCGACAAGGAACG    >  2:1270208/1‑100                                                                                                           GCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTCGCGAATAACCCGACAAGGAACGC   <  1:484542/100‑1                                                                                                           GCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTCGCGAATAACCCGACAAGGAACGC   >  1:1578254/1‑100                                                                                                            CAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTCGCGAATAACCCGACAAGGAACGCC  <  2:2650409/100‑1                                                                                                            CAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTCGCGAATAACCCGACAAGGAACGCC  >  1:802227/1‑100                                                                                                                                                                                                                 TATTCGCGAAATAAACGACCGGGATAAGCACTATTATTTCAAAGATTATAAAGTTGAATCGTCAGTTTAAATTATAAAAATTGCCTGATACGCTGC‑GCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/361318‑361212 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatcaggcAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTTTGAAATAATAGTGCTTATCCCGGTCGTTTATTTCGCGAATAACCCGACAAGGAACGCC  >  NC_000913/361237‑361335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.