| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2041152 = | NA (NA) | 8 (0.080) | 8/162 | NT | NA | noncoding (1/34 nt) | REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2041182 = | NA (NA) | noncoding (31/34 nt) | REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
ATTGAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCGGCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2041256‑2041152‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAA > NC_000913/2041182‑2041280 ATTGAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACAT > 1:359579/1‑100ATTGAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGAGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACAT > 2:2150463/1‑100 TGAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCC < 2:2368455/100‑1 AAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAAGCTGATGCGAGCTGTGAATGCCGGAGAGGGCGCTCGCGCCACATCCGG > 1:2062622/1‑100 AAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATGTGGCGCGAGCGCCCTATCCGG < 1:592338/100‑1 AAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCG < 1:1329289/99‑1 AATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGAATGCCGGATAGGGCGCTCGCGCCACATCCGGC < 1:416583/100‑1 AGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTT < 1:2717574/100‑1 TGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAA > 2:1336836/1‑100 CTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCACATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTT > 2:1387808/1‑100 ATGCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTA > 2:936787/1‑100 GCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATT > 2:647518/1‑100 GCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTAT > 2:821378/1‑99 GCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGAT < 2:2717590/100‑1 CGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATA > 1:771963/1‑100 ATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAAC < 2:443383/100‑1 ATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAAC > 1:1292402/1‑100 ATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAAC < 1:1560904/100‑1 TCCGTCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCAACAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAAC < 1:2639223/99‑1 CCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTG > 2:169437/1‑100 CCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTG < 2:2271779/100‑1 CCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTG > 1:1563425/1‑100 CGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGn < 2:1237059/100‑2 GCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGA < 1:909274/100‑1 CATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAA > 1:1234921/1‑100 ATTGAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCGGCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2041256‑2041152‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAA > NC_000913/2041182‑2041280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |