New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3114511	NA (NA)	5 (0.050)	4/164	NT	NA	noncoding (134/168 nt)	REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913	= 3114541	NA (NA)					noncoding (164/168 nt)	REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences

GGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3114413‑3114511 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAAGCCGCG  <  NC_000913/3114541‑3114436                                                                                                                                                                                                               GGGTGTCTGCCAGCACAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGAGTTAACCCGGTGCGCCTTATTTCATG                                                                                                           <  1:263397/100‑1  GGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGC                                                                                                          <  2:2840772/100‑1  GGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGC                                                                                                          >  1:2358460/1‑100    TGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCG                                                                                                        <  2:1191982/100‑1       CTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGAT                                                                                                     >  2:2741801/1‑100       CTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGAT                                                                                                     >  2:1982241/1‑100                               TTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATAAGGCGCTCGCGCCGCATCCGGCA                                                                             <  1:1875651/100‑1                                TCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATAAGGCGCTCGCGCCGCATCCGGCAT                                                                            <  2:2941387/100‑1                                TCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATAAGGCGCTCGCGCCGCATCCGGCAT                                                                            <  2:162966/100‑1                                    CGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTACCCCGGTGCGCCTTATTTCATGCCGGATAAGGCGCTCGCGCCGCATCCGGCATGA                                                                          <  1:1756234/98‑1                                    CGTCTGTAGGCCCAATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATAAGGCGCTCGCGCCGCATCCGGCATGAAA                                                                        <  1:1701617/100‑1                                                                                                 taggctgaATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGTCGCACCGGGTTAACACGTTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGG           <  1:194766/92‑1                                                                                                   TGCCGGATGCGGCGCGAGCGCCTTATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAA         >  1:608837/1‑100                                                                                                    GCCGGATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAA        >  2:313632/1‑100                                                                                                    GCCGGATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAA        <  2:489919/100‑1                                                                                                    GCCGGATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAA        <  2:844461/100‑1                                                                                                    GCCCGATAACGCCCCCGCGCCGCATCCGGCATGAAACAAGGCGCACCGGGTTAACACATTTGCCCGTTGCGCCTGCTTATCGGGCCTACAGACGGGGAA         <  2:2902406/99‑1                                                                                                     CCGGATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAAG       <  1:1829283/100‑1                                                                                                        GATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAAGCCG    <  2:1644865/100‑1                                                                                                         ATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAAGCCGC   <  2:42247/100‑1                                                                                                          TAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAAGCCGCG  >  1:1912313/1‑100                                                                                                          TAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAAGCCGCG  <  1:1238451/100‑1                                                                                                                                                                                                               GGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3114413‑3114511 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAAGCCGCG  <  NC_000913/3114541‑3114436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.