BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3493758 =	NA (NA)	4 (0.040)	4/162	NT	NA	noncoding (1/26 nt)	REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences
*	?	NC_000913	3493784 =	NA (NA)	4 (0.040)	4/162	NT	NA	intergenic (+35/‑227)	tsgA/nirB	putative transporter/nitrite reductase, large subunit, NAD(P)H‑binding

Only 100 of 161 total aligned reads displayed.

AAACGGTCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAAC  >  NC_000913/3493659‑3493856

agtcacggaattgtctgatatttcatgtttgtgcaaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagg                                                                                                    >  2:371758‑M1/100‑100 (MQ=255)

aaaCGGTCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATg                                                                                                    >  2:2728381/1‑100 (MQ=255)

 gtcacggaattgtctgatatttcatgtttgtgcaaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagg                                                                                                    <  1:1656462‑M1/1‑1 (MQ=255)

 gtcacggaattgtctgatatttcatgtttgtgcaaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagGc                                                                                                   <  2:916599‑M1/2‑1 (MQ=255)

  aCGGTCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGcc                                                                                                  <  1:1315281/100‑1 (MQ=255)

  aCGGTCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGcc                                                                                                  >  1:505278/1‑100 (MQ=255)

   cGGTCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCg                                                                                                 <  2:2345165/100‑1 (MQ=255)

   cGGTCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCg                                                                                                 <  1:2127714/100‑1 (MQ=255)

    acggaattgtctgttatttcatgtttgtgcaaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagGCcgn                                                                                                >  1:2801492‑M1/96‑99 (MQ=255)

    acggaattgtctgatatttcatgtttgtgcaaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagGCCgg                                                                                                >  2:2185177‑M1/96‑100 (MQ=255)

    acggaattgtctgatatttcatgtgtgtgcaaaaaatagacaaaatgagcgggtttagagaaatagaggcacggagcgggggaagagaggaaaaggccn                                                                                                 >  1:2869569‑M1/96‑98 (MQ=255)

        tGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACgg                                                                                            >  1:2716111/1‑100 (MQ=255)

         gTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGc                                                                                           >  1:471829/1‑100 (MQ=255)

         gTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGc                                                                                           <  1:1518291/100‑1 (MQ=255)

         gTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGc                                                                                           >  1:1738733/1‑100 (MQ=255)

          tccGCTGTTGTCTTTGTGCTGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACCCCCTGACCTCTCATTAATTGCTCATGCCGGACGGc                                                                                           <  1:1825010/97‑1 (MQ=255)

          tACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCa                                                                                          <  2:385975/100‑1 (MQ=255)

          tACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCa                                                                                          >  2:690480/1‑100 (MQ=255)

           aCGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCAc                                                                                         >  2:39455/1‑100 (MQ=255)

            cGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACt                                                                                        >  2:700776/1‑100 (MQ=255)

            cGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACt                                                                                        >  2:1683869/1‑100 (MQ=255)

                gtcgtcTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTAtcg                                                                                    <  2:2415052/100‑1 (MQ=255)

                gtcgtcTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTAtcg                                                                                    >  1:763981/1‑100 (MQ=255)

                 tcgtcTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTAtcgt                                                                                   <  2:461524/100‑1 (MQ=255)

                  cgtcTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTAtcgtc                                                                                  >  2:623437/1‑100 (MQ=255)

                   gtcTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTAtcgtcg                                                                                 >  2:1214450/1‑100 (MQ=255)

                   gtcTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTAtcgtcg                                                                                 <  1:2927440/100‑1 (MQ=255)

                     cTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCgtcgtc                                                                               >  2:2300866/1‑100 (MQ=255)

                     cTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCgtcgtc                                                                               >  1:2239030/1‑100 (MQ=255)

                       ttGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCg                                                                             <  2:147084/100‑1 (MQ=255)

                        tgtgATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCgg                                                                            <  2:594680/100‑1 (MQ=255)

                        tgtgATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCgg                                                                            >  2:2583579/1‑100 (MQ=255)

                           tttgtgcaaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagGCCGGACGGCACTATCGTCGTCCGGCCt                                                                         >  2:550802‑M1/73‑100 (MQ=255)

                             tgtgCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCttt                                                                       >  1:1566733/1‑100 (MQ=255)

                             tgtgCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCttt                                                                       >  2:1379802/1‑100 (MQ=255)

                              gtgcaaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagGCCGGACGGCACTATCGTCGTCCGGCCtttt                                                                      >  2:2883839‑M1/70‑100 (MQ=255)

                              gtgCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCttt                                                                       <  1:2464098/99‑1 (MQ=255)

                               tgCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTc                                                                     <  1:1450344/100‑1 (MQ=255)

                                gCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTcc                                                                    <  1:860457/100‑1 (MQ=255)

                                gCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTcc                                                                    >  1:382604/1‑100 (MQ=255)

                                gCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTcc                                                                    <  1:2369678/100‑1 (MQ=255)

                                  aaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagGCCGGACGGCACTATCGTCGTCCGGCCTTTTCctc                                                                  >  1:998589‑M1/66‑100 (MQ=255)

                                   tCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCGTTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCctct                                                                 >  1:2566912/1‑100 (MQ=255)

                                   tCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCctct                                                                 >  2:2760952/1‑100 (MQ=255)

                                     cTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCctctct                                                               >  2:1860677/1‑100 (MQ=255)

                                     cTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCctctct                                                               <  1:2533246/100‑1 (MQ=255)

                                      tGTTAGGTTTCGTCAGTCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCtt                                                              >  2:775960/1‑100 (MQ=255)

                                       gTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTc                                                             <  2:468797/100‑1 (MQ=255)

                                            gTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCg                                                        >  2:1758271/1‑100 (MQ=255)

                                              ttCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCt                                                      <  1:2274456/100‑1 (MQ=255)

                                                 gTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTAc                                                    >  2:1076624/1‑99 (MQ=255)

                                                 gTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACg                                                   >  2:580523/1‑100 (MQ=255)

                                                 gTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACg                                                   >  1:1896766/1‑100 (MQ=255)

                                                 gTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACg                                                   >  2:2492854/1‑100 (MQ=255)

                                                 gTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACg                                                   <  1:742909/100‑1 (MQ=255)

                                                 gTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACg                                                   >  2:1908543/1‑100 (MQ=255)

                                                   cAGCCGTCACCGTCAGCATAACACCCTTACCTCTCATTAATTTCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTa                                                     >  1:276412/1‑96 (MQ=255)

                                                   cAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTg                                                 <  2:2141383/100‑1 (MQ=255)

                                                     gCCGTCACCGTCAGCATAACACCCTGACCTCTCGTTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCa                                               <  1:1231564/100‑1 (MQ=255)

                                                     gCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGc                                                >  1:1189174/1‑99 (MQ=255)

                                                     gCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCa                                               <  2:867108/100‑1 (MQ=255)

                                                     gCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCa                                               >  2:1382061/1‑100 (MQ=255)

                                                      ccgtcaccgtcaGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCAt                                              <  1:1011975/100‑1 (MQ=255)

                                                      ccgtcaccgtcaGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCAt                                              <  1:951681/100‑1 (MQ=255)

                                                       cgtcaccgtcaGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATc                                             >  1:2875007/1‑100 (MQ=255)

                                                          caccgtcaGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTAt                                          >  1:2031576/1‑100 (MQ=255)

                                                            ccgtcaGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTAttt                                        >  2:1705763/1‑100 (MQ=255)

                                                             cgtcaGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTc                                       <  1:623432/100‑1 (MQ=255)

                                                             cgtcaGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTc                                       >  2:1652756/1‑100 (MQ=255)

                                                               tcaGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCta                                     <  1:508802/100‑1 (MQ=255)

                                                               tcaGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCta                                     <  2:2089962/100‑1 (MQ=255)

                                                                caGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCtat                                    <  2:1896777/100‑1 (MQ=255)

                                                                 aGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCTTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCtata                                   <  1:2477787/100‑1 (MQ=255)

                                                                  gCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATaa                                  >  1:1425244/1‑100 (MQ=255)

                                                                  gCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATaa                                  >  1:3013259/1‑100 (MQ=255)

                                                                     tAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAAcc                               >  2:2383727/1‑100 (MQ=255)

                                                                       acacCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCg                             >  2:2313395/1‑100 (MQ=255)

                                                                        cacCCTGTCCTCTCATTAAGTTCTCATGCCGTACGGCACTATCGTCGTCCGGCCTTTTCCTCGCGTCCCCCGCTACGTTCATCTATTTCTATAAAcc                               <  1:2692260/97‑1 (MQ=255)

                                                                        cacCCTGACCTCTCATTAATTGCTAATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGc                            <  2:1211140/100‑1 (MQ=255)

                                                                             tGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCAtt                       >  2:2469124/1‑100 (MQ=255)

                                                                                ccTTTCATTAATTGCTCATGCCGGACGTCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTg                    <  1:2813209/100‑1 (MQ=255)

                                                                                ccTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTg                    <  1:785747/100‑1 (MQ=255)

                                                                                ccTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTg                    <  2:885604/100‑1 (MQ=255)

                                                                                 ctctCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCCCTACGTGCATCTATTTCTATAAACCCGCTCATTTTg                    >  2:311535/1‑99 (MQ=255)

                                                                                  tctcATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTc                  <  1:775955/100‑1 (MQ=255)

                                                                                  tctcATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTc                  >  1:963703/1‑100 (MQ=255)

                                                                                  tctcATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTc                  <  2:3004794/100‑1 (MQ=255)

                                                                                   ctcATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCt                 >  2:2635090/1‑100 (MQ=255)

                                                                                   ctcATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCt                 >  2:1995028/1‑100 (MQ=255)

                                                                                     cATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTTTTTTTTTTTTCCTCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTAt               >  1:173479/1‑100 (MQ=255)

                                                                                          aTTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTAtttttt          <  2:2239043/100‑1 (MQ=255)

                                                                                           ttGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTg         <  2:1639865/100‑1 (MQ=255)

                                                                                           ttGCTCACGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTg         <  1:994665/100‑1 (MQ=255)

                                                                                             gCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGca       >  1:485173/1‑100 (MQ=255)

                                                                                             gCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGca       >  1:1745759/1‑100 (MQ=255)

                                                                                              cTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGcac      >  2:495260/1‑100 (MQ=255)

                                                                                              cTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGcac      >  2:2571600/1‑100 (MQ=255)

                                                                                               tCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGcaca     <  1:1214444/100‑1 (MQ=255)

                                                                                               tCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGcaca     <  1:2292459/100‑1 (MQ=255)

                                                                                                  tGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAAc  <  1:481462/100‑1 (MQ=255)

AAACGGTCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAAC  >  NC_000913/3493659‑3493856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.