New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3547887 =NA (NA)7 (0.070) 5/164 NT NA noncoding (1/87 nt) REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3547917 = NA (NA)noncoding (31/87 nt) REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 150 total aligned reads displayed.

CGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTC  >  NC_000913/3547788‑3547986
                                                                                                   |                                                                                                   
cggcgcagagctgcagcgaagaagaagtagagtgcggttgatgccggatgcgatgcttgacgcgtcttatccggcctactaattcatcccgaatcgtagg                                                                                                     <  1:1510722‑M1/1‑1 (MQ=255)
 ggcgcagagctgcagcgaagaagaagtagagtgcggttgatgccggatgcgatgcttgacgcgtcttatccggcctactaattcatcccgaatcgtagGc                                                                                                    >  2:1306631‑M1/99‑100 (MQ=255)
  agaCCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGcc                                                                                                   >  1:1871481/1‑100 (MQ=255)
   cgcagagctgcagcgaagaagaagtagagtgcggttgatgccggatgcgatgcttgacgcgtcttatccggcctactaattcatcccgaatcgtagGCCg                                                                                                  >  1:1563142‑M1/97‑100 (MQ=255)
    aCCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCgg                                                                                                 <  2:632485/100‑1 (MQ=255)
     cagagctgcagcgaagaagaagtagagtgcggttgatgccggatgcgatgcttgacgcgtcttatccggcctactaattcatcccgaatcgtagGCCGGa                                                                                                <  1:982975‑M1/6‑1 (MQ=255)
      cATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGATTATGGTGATTTGATAACTCTGACTGCCggtt                                                                                               <  2:2061751/100‑3 (MQ=255)
      agagctgcagcgaagaagaagtagagtgcggttgatgccggatgcgatgcttgacgcgtcttatccggcctactaattcatcccgaatcgtagGCCGGAt                                                                                               >  1:2840957‑M1/94‑100 (MQ=255)
       aTCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGTCTGTCTGCTGCTGAATATGGTGATTTGCTAACACTGAGTGCCGGATg                                                                                              >  1:2888330/1‑100 (MQ=255)
        tCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATgc                                                                                             >  1:214310/1‑100 (MQ=255)
          aaaTCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATgcgg                                                                                           >  2:11430/1‑100 (MQ=255)
          aaaTCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATgcgg                                                                                           >  1:1552201/1‑100 (MQ=255)
          aaaTCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATgc                                                                                             >  1:1823429/1‑98 (MQ=255)
           aaTCCTGGTCGGTGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATgcggc                                                                                          >  1:1600972/1‑100 (MQ=255)
           aaTCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATgcggc                                                                                          <  1:2336624/100‑1 (MQ=255)
           aaTCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATgcggc                                                                                          >  2:2923191/1‑100 (MQ=255)
            aTCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATgcggcg                                                                                         <  2:535489/100‑1 (MQ=255)
             tCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGt                                                                                        >  2:481413/1‑100 (MQ=255)
             tCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGt                                                                                        >  2:1835402/1‑100 (MQ=255)
               cTGGTCGATGCTGGAAACCATTATCTCGGTGGGCGGCCGGGTAGGCTTTCAACTACGGAATATGGTGATGATATAACACTGACTGTCgcgtccggc                                                                                          >  1:1016008/1‑88 (MQ=255)
                tGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGAc                                                                                     <  2:1843514/100‑1 (MQ=255)
                  gTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCg                                                                                   <  1:1657576/100‑1 (MQ=255)
                  gTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCg                                                                                   >  2:1179709/1‑100 (MQ=255)
                    cGATGCTGGAATCCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCC                                                                                 <  1:220802‑M1/100‑1 (MQ=255)
                      aTGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTT                                                                               >  2:2536853‑M1/1‑100 (MQ=255)
                       tGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTA                                                                              >  2:167944‑M1/1‑100 (MQ=255)
                       tGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTA                                                                              >  1:1739610‑M1/1‑100 (MQ=255)
                        gCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTAT                                                                             <  2:1874398‑M1/100‑1 (MQ=255)
                        gCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTAT                                                                             >  2:1485431‑M1/1‑100 (MQ=255)
                        gCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTCATTTGATAACACCGACTGCCAGATGCGGCCTCACCGCCTTct                                                                             >  2:1604171‑M1/1‑98 (MQ=255)
                          tGGAAACTATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGGATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCC                                                                           <  1:620302‑M1/100‑1 (MQ=255)
                          tGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCC                                                                           <  2:2214793‑M1/100‑1 (MQ=255)
                          gtagagtgcggttgatgccggatgcgatgcttgacgcgtcttatccggcctactaattcatcccgaatcgtagGCCGGATGCGGCGTGACCGCCTTATcc                                                                           >  2:1700880‑M1/74‑100 (MQ=255)
                          gtagagtgcggttgatgccggatgcgatgcttgacgcgtcttatccggcctactaattcatcccgaatcgtagGCCGGATGCGGCGTGACCGCCTTATcc                                                                           >  1:1347483‑M1/74‑100 (MQ=255)
                           ggAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCG                                                                          >  1:2196274‑M1/1‑100 (MQ=255)
                             gagtgcggttgatgccggatgcgatgcttgacgcggcttatccggcgtactaattcatcccgaatcgtagGCCGGATGCGGCGTGACCGCCTTATCCGGc                                                                        >  1:691875‑M1/71‑100 (MQ=255)
                              aaCCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCC                                                                       <  1:219397‑M1/100‑1 (MQ=255)
                              aaCCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCC                                                                       <  2:701333‑M1/100‑1 (MQ=255)
                               gtgcggttgatgccggatgcgatgcttgacgcgtcttatccggcctactaattcatcccgaatcgtagGCCGGATGCGGCGTGACCGCCTTATCCGGCCt                                                                      >  2:480848‑M1/69‑100 (MQ=255)
                                    tATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAt                                                                 >  2:165293/1‑100 (MQ=255)
                                       ctcGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAt                                                                 <  1:485202/97‑1 (MQ=255)
                                         cGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCggg                                                            <  2:2109791/100‑1 (MQ=255)
                                           gtgtGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGAt                                                          <  2:2894779/100‑1 (MQ=255)
                                           gtgtGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGAt                                                          >  2:814912/1‑100 (MQ=255)
                                              tgCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGaa                                                       <  2:640521/100‑1 (MQ=255)
                                                   tCTGGTAGGCTGGCTGCTGCTGACTATGGTGATTTGATGACACTGACTGCGGCATGCGGCGTGACCGCCTTATCCGGCTTACGGTTCgg                                                             <  1:1189417/89‑1 (MQ=37)
                                                    cTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgta                                                 <  2:2682866‑M2/100‑4 (MQ=255)
                                                    cTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgta                                                 <  2:1497932‑M2/100‑4 (MQ=255)
                                                    cTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgta                                                 >  2:1880783‑M2/1‑97 (MQ=255)
                                                      ggTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACtaattcatcccgaatcgtagg                                               <  2:214312‑M1/100‑22 (MQ=255)
                                                       gTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACtaattcatcccgaatcgtaggc                                              <  2:971283‑M1/100‑23 (MQ=255)
                                                        tAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggcc                                             >  2:141698‑M2/1‑93 (MQ=255)
                                                         aGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACtaattcatcccgaatcgtaggccg                                            <  1:1753772‑M1/100‑25 (MQ=255)
                                                         aGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggccg                                            <  1:1050313‑M2/100‑9 (MQ=255)
                                                         aGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggccg                                            <  1:2368431‑M2/100‑9 (MQ=255)
                                                         aGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggccg                                            <  1:503901‑M2/100‑9 (MQ=255)
                                                          ggCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACtaattcatcccgaatcgtaggccgg                                           <  1:2352668‑M1/100‑26 (MQ=255)
                                                          ggCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggccgg                                           >  2:1369998‑M2/1‑91 (MQ=255)
                                                           gCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggccgga                                          <  1:2378721‑M2/100‑11 (MQ=255)
                                                           gCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggccgga                                          <  2:195795‑M2/100‑11 (MQ=255)
                                                             tGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggccggata                                        >  1:1273868‑M2/1‑88 (MQ=255)
                                                             tGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggccggata                                        <  2:298028‑M2/100‑13 (MQ=255)
                                                             tGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggccggata                                        >  1:837438‑M2/1‑88 (MQ=255)
                                                             tGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggccggata                                        >  2:1709303‑M2/1‑88 (MQ=255)
                                                                 tgctgctgAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGAc                                    <  1:11429/100‑1 (MQ=255)
                                                                 tgctgctgAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGAc                                    <  2:2338088/100‑1 (MQ=255)
                                                                 tgctgctgAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGAc                                    >  2:2201188/1‑100 (MQ=255)
                                                                 tgctgctgAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGAc                                    >  1:2398766/1‑100 (MQ=255)
                                                                   ctgctgAATCTGGTGATTTGCTAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGAcgc                                  >  1:1183887/1‑100 (MQ=255)
                                                                   ctgctgAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGAcgc                                  >  2:1571842/1‑100 (MQ=255)
                                                                    tgctgAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGAcgcg                                 <  2:241197/100‑1 (MQ=255)
                                                                    tgctgAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGAcgcg                                 >  2:1645109/1‑100 (MQ=255)
                                                                     gctgAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGt                                >  1:465465/1‑100 (MQ=255)
                                                                     gctgAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGt                                >  2:599085/1‑100 (MQ=255)
                                                                        gAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCaa                             >  2:2127065/1‑100 (MQ=255)
                                                                        gAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCaa                             >  2:862932/1‑100 (MQ=255)
                                                                        gAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCaa                             <  2:591953/100‑1 (MQ=255)
                                                                         aaTATTGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCaa                             <  1:1091826/99‑1 (MQ=255)
                                                                          atatGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAgc                           <  2:1952702/100‑1 (MQ=255)
                                                                          atatGGTGATTTGATAACACTGACTGCCAGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAgc                           <  2:561519/100‑1 (MQ=255)
                                                                            atGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAgcat                         >  2:424889/1‑100 (MQ=255)
                                                                             tGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAgcatc                        <  2:2515375/100‑1 (MQ=255)
                                                                              ggTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAgcatcg                       >  1:28636/1‑100 (MQ=255)
                                                                              ggTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAgcatcg                       >  1:2155555/1‑100 (MQ=255)
                                                                                tGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCA                     <  1:855947‑M2/100‑1 (MQ=255)
                                                                                   tttGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCC                  <  2:1570705‑M2/100‑1 (MQ=255)
                                                                                     tGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGG                <  2:686704‑M2/100‑1 (MQ=255)
                                                                                     tGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGG                <  1:2155347‑M2/100‑1 (MQ=255)
                                                                                      gATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGC               <  2:2810632‑M2/100‑1 (MQ=255)
                                                                                      gATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGC               <  1:2737978‑M2/100‑1 (MQ=255)
                                                                                      gATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGC               <  1:656661‑M2/100‑1 (MQ=255)
                                                                                       aTAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCa              >  2:916673/1‑100 (MQ=255)
                                                                                       aTAACACTGACTGCCGGATGCGGCGTGACCGCCTTAGCCGGCCTACGATTCGGGATGAATTAGTAGgccggatgcgatgcttgacgcgtcttatccggcc              <  1:2020861‑M1/100‑35 (MQ=255)
                                                                                        tAACACTGACTGCCGGTTGCTGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGgccggatgcgatgcttgacgcgtcttatccggcct             <  1:565765‑M1/100‑36 (MQ=255)
                                                                                               gactgCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGc      >  1:1266155/1‑100 (MQ=255)
                                                                                               gactgCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAACGAGCGGCAAGCATCGCATGAGGCATCAACCGc      >  1:720820/1‑100 (MQ=25)
                                                                                                actgCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCa     >  2:1047434/1‑100 (MQ=255)
                                                                                                 ctgCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCAc    >  2:328904/1‑100 (MQ=255)
                                                                                                   GCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCActc  >  2:2963956‑M1/1‑100 (MQ=255)
                                                                                                   GCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCActc  <  2:1436507‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
CGAGACCATCAAATCCTGGTCGATGCTGGAAACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTC  >  NC_000913/3547788‑3547986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.