New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3547887 =NA (NA)7 (0.070) 5/164 NT NA noncoding (1/87 nt) REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3547917 = NA (NA)noncoding (31/87 nt) REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 153 total aligned reads displayed.

AACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGT  >  NC_000913/3547818‑3548016
                                                                                                   |                                                                                                   
agtgcggttgatgccggatgcgatgcttgacgcgtcttatccggcctactaattcatcccgaatcgtagGCCGGATGCGGCGTGACCGCCTTATCCGGcc                                                                                                     >  2:568586‑M1/70‑100 (MQ=255)
aaCCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCC                                                                                                     <  1:219397‑M1/100‑1 (MQ=255)
aaCCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCC                                                                                                     <  2:701333‑M1/100‑1 (MQ=255)
     ttgtctcGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGa                                                                                                <  1:2644348/97‑1 (MQ=255)
      tATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAt                                                                                               >  2:165293/1‑100 (MQ=255)
         ctcGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAt                                                                                               <  1:485202/97‑1 (MQ=255)
          atgccggatgcgatgcttgacgcgtcttatccggcctactaattcatcccgaatcgtagGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCgg                                                                                           >  2:2994127‑M1/60‑100 (MQ=255)
           cGGTGTGCTGTCTGGTTGTCTGTCTGCTGGGGAATATGGTGATTAGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCggg                                                                                          <  1:121173/100‑1 (MQ=25)
           cGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCggg                                                                                          <  2:2109791/100‑1 (MQ=255)
            ggTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGTTGATTTGATAACGCTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCgg                                                                                           <  1:2147706/98‑1 (MQ=255)
             gtgtGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGAt                                                                                        <  2:2894779/100‑1 (MQ=255)
                tgCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGaa                                                                                     <  2:640521/100‑1 (MQ=255)
                    gTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAg                                                                                 <  1:286245‑M2/100‑2 (MQ=255)
                     tCTGGTAGGCTGGCTGCTGCTGACTATGGTGATTTGATGACACTGACTGCGGCATGCGGCGTGACCGCCTTATCCGGCTTACGGTTCgg                                                                                           <  1:1189417/89‑1 (MQ=37)
                      cTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgta                                                                               >  2:1880783‑M2/1‑97 (MQ=255)
                          tAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggcc                                                                           >  2:141698‑M2/1‑93 (MQ=255)
                           aGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACtaattcatcccgaatcgtaggccg                                                                          <  1:1753772‑M1/100‑25 (MQ=255)
                           aGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggccg                                                                          <  1:1050313‑M2/100‑9 (MQ=255)
                           aGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggccg                                                                          <  1:2368431‑M2/100‑9 (MQ=255)
                            ggCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACtaattcatcccgaatcgtaggccgg                                                                         <  1:2352668‑M1/100‑26 (MQ=255)
                            ggCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggccgg                                                                         >  2:1369998‑M2/1‑91 (MQ=255)
                             gCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggccgga                                                                        <  1:2378721‑M2/100‑11 (MQ=255)
                             gCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggccgga                                                                        <  2:195795‑M2/100‑11 (MQ=255)
                              cTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggccggat                                                                       <  2:2971457‑M2/100‑12 (MQ=255)
                               tGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggccggata                                                                      <  2:298028‑M2/100‑13 (MQ=255)
                               tGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggccggata                                                                      >  2:1709303‑M2/1‑88 (MQ=255)
                               tGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAgtaggccggata                                                                      >  1:1273868‑M2/1‑88 (MQ=255)
                                   tgctgctgAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGAc                                                                  <  2:2338088/100‑1 (MQ=255)
                                   tgctgctgAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGAc                                                                  >  2:2201188/1‑100 (MQ=255)
                                   tgctgctgAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGAc                                                                  >  1:2398766/1‑100 (MQ=255)
                                   tgctgctgAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGAc                                                                  <  1:11429/100‑1 (MQ=255)
                                     ctgctgAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGAcgc                                                                >  2:1571842/1‑100 (MQ=255)
                                       gctgAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGt                                                              >  2:1241517/1‑100 (MQ=255)
                                       gctgAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGt                                                              >  1:465465/1‑100 (MQ=255)
                                       gctgAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGt                                                              >  2:599085/1‑100 (MQ=255)
                                          gAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCaa                                                           >  2:862932/1‑100 (MQ=255)
                                          gAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCaa                                                           <  2:591953/100‑1 (MQ=255)
                                          gAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCaa                                                           >  2:2127065/1‑100 (MQ=255)
                                          gAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCaa                                                           >  1:196366/1‑100 (MQ=255)
                                            atatGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAgc                                                         <  2:674822/100‑1 (MQ=255)
                                             tatGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAgca                                                        >  2:1479170/1‑100 (MQ=255)
                                              atGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAgcat                                                       >  2:424889/1‑100 (MQ=255)
                                                ggTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAgcatcg                                                     >  1:2155555/1‑100 (MQ=255)
                                                  tGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCA                                                   <  1:855947‑M2/100‑1 (MQ=255)
                                                   gATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCAT                                                  <  2:517776‑M2/100‑1 (MQ=255)
                                                       tGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGG                                              >  1:1179703‑M2/1‑100 (MQ=255)
                                                        gATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGgccggatgcgatgcttgacgcgtcttatccggc                                             <  1:858389‑M1/100‑34 (MQ=255)
                                                        gATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGC                                             <  2:2810632‑M2/100‑1 (MQ=255)
                                                         aTAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCa                                            >  2:916673/1‑100 (MQ=255)
                                                         aTAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCa                                            <  1:167942/100‑1 (MQ=255)
                                                          tAACACTGACTGCCGGTTGCTGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGgccggatgcgatgcttgacgcgtcttatccggcct                                           <  1:565765‑M1/100‑36 (MQ=255)
                                                           aaCACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATc                                          >  2:1527705/1‑100 (MQ=255)
                                                            acacTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCa                                         >  1:2378580/1‑100 (MQ=255)
                                                                tgactgCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCg                                     <  2:286247/100‑1 (MQ=255)
                                                                   ctgCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCAc                                  >  2:328904/1‑100 (MQ=255)
                                                                   aggccggataaggcggtcacgccgcatccggcCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCAc                                  >  2:480848‑M2/33‑100 (MQ=255)
                                                                    ggccggataaggcggtcacgccgcatccggcCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCAct                                 >  2:568586‑M2/32‑100 (MQ=255)
                                                                     gccggctaaggcggtcacgccgcatccggcCTACGACTCGGGACGAATAAGTAGGCCGGATAAGACTCGTCAAGCCTCGCATCCGGCATCAACCGCacta                                >  1:663551‑M2/31‑99 (MQ=255)
                                                                     gccggataaggcggtcacgccgcatccggcCTACGATTCGGGATGAATTAGTACGCCGGATAAGCCGCGTCAAGCATCGCATCCGGCATCAACCGCActc                                >  1:691875‑M2/31‑100 (MQ=255)
                                                                      CCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCACATCCGGCATCAACCGCActct                               <  2:2680805‑M1/100‑1 (MQ=255)
                                                                      CCGGATGCGGCGTGACCGCCTTAGCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCActct                               >  2:1001703‑M1/1‑100 (MQ=255)
                                                                       CGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTa                              <  2:2948989‑M1/100‑1 (MQ=255)
                                                                        ggataaggcggtcacgccgcatccggcCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTAc                             >  1:1347483‑M2/28‑100 (MQ=255)
                                                                        ggataaggcggtcacgccgcatccggcCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTAc                             >  2:1700880‑M2/28‑100 (MQ=255)
                                                                         GATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACt                            <  2:796322‑M1/100‑1 (MQ=255)
                                                                             cggcgTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTGcttctt                        >  1:733451/1‑100 (MQ=255)
                                                                             cggcgTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTActtctt                        >  2:1542743/1‑100 (MQ=255)
                                                                              ggcgTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTActtcttc                       >  2:1066633/1‑100 (MQ=255)
                                                                              ggcgTGAACGCCTTATCCGGCCTACGATTCGGCATTAATTAGTAGGCCGGTAAGACGCGTCAAGCGTCGCATCCGGCATCAACCGCACTCTActtcttct                      >  2:2034643/1‑100 (MQ=37)
                                                                                cgTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTActtcttctt                     >  2:1617002/1‑100 (MQ=255)
                                                                                  tGACCGCCTTATCCGGCCTACGATTCGGGATGTATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCg                   <  1:539562/100‑1 (MQ=255)
                                                                                   gACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGc                  >  1:2304946/1‑100 (MQ=255)
                                                                                   aaCCGCCTTATCCGGCTTACGATGCGGGATGAACTAGTAGGCCGGGTCAGACGCGTCAAGCATACCATCCGGCATCAACCGCGCTCTACTGCGCCTTCGc                  >  1:1871639/2‑100 (MQ=255)
                                                                                    aCCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCt                 <  2:1928307/100‑1 (MQ=255)
                                                                                      cGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGc               >  1:2596814/1‑100 (MQ=255)
                                                                                       gCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTCCGCTGCa              >  2:2237799/1‑100 (MQ=255)
                                                                                        ccTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAg             >  2:1587864/1‑100 (MQ=255)
                                                                                         cTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGc            >  2:1634108/1‑100 (MQ=255)
                                                                                         cTTATCCGGCCTACGACTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGc            <  2:2421254/100‑1 (MQ=255)
                                                                                           tATCCGGCCTACtaattcatcccgaatcgtaggccggataaggcggtcacgccgcatccggcagtcagtgttatcaaatcaccatattcagcagcagaca          >  1:1273868‑M1/1‑12 (MQ=255)
                                                                                           tATCCGGCCTACtaattcatcccgaatcgtaggccggataaggcggtcacgccgcatccggcagtcagtgttatcaaatcaccatattcagcagcagaca          >  1:837438‑M1/1‑12 (MQ=255)
                                                                                            atccggcCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGctct         >  1:2840957‑M2/8‑100 (MQ=255)
                                                                                            atccggcCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGctct         >  1:2342140‑M2/8‑100 (MQ=255)
                                                                                            aTCCGGCCTACtaattcatcccgaatcgtaggccggataaggcggtcacgccgcatccggcagtcagtgttatcaaatcaccatattcagcagcagacag         <  2:2971457‑M1/100‑90 (MQ=255)
                                                                                            aTCCGGCCTACtaattcatcccgaatagtaggccggataaggcggtcacgccgcatccggcagtcagtgttatcaaatcaccatattcagcagcagacag         >  2:1861335‑M1/1‑11 (MQ=255)
                                                                                             tccggcCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTg        <  1:982975‑M2/94‑1 (MQ=255)
                                                                                             tccggcCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTg        <  2:437758‑M2/94‑1 (MQ=255)
                                                                                             tccggcCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTg        >  2:2509946‑M2/7‑100 (MQ=255)
                                                                                             tCCGGCCTACtaattcatcccgaatcgtaggccggataaggcggtcacgccgcatccggcagtcagtgttatcaaatcaccatattcagcagcagacagc        <  2:195795‑M1/100‑91 (MQ=255)
                                                                                              ccGGCCTACtaattcatcccgaatcgtaggccggataaggcggtcacgccgcatccggcagtcagtgttatcaaatcaccatattcagcagcagacagcc       >  2:1369998‑M1/1‑9 (MQ=255)
                                                                                              ccGGCCTACGATTCGGGATGAATTAgtaggccggataaggcggtcacgccgcatccggcagtcagtgttatcaaatcaccatattcagcagcagacagcc       <  1:2352668‑M2/100‑76 (MQ=255)
                                                                                               cggcCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTgcg      >  1:1563142‑M2/5‑100 (MQ=255)
                                                                                               cGGCCTACtaattcatcccgaatcgtaggccggataaggcggtcacgccgcatccggcagtcagtgttatcaaatcaccatattcagcagcagacagcct      <  1:503901‑M1/100‑93 (MQ=255)
                                                                                               cGGCCTACtaattcatcccgaatcgtaggccggataaggcggtcacgccgcatccggcagtcagtgttatcaaatcaccatattcagcagcagacagcct      <  1:1050313‑M1/100‑93 (MQ=255)
                                                                                               cGGCCTACGATTCGGGATGAATTAgtaggccggataaggcggtcacgccgcatccggcagtcagtgttatcaaatcaccatattcagcagcagacagcct      <  1:1753772‑M2/100‑77 (MQ=255)
                                                                                                ggCCTACtaattcatcccgaatcgtaggccggataaggcggtcacgccgcatccggcagtcagtgttatcaaatcaccatattcagcagcagacagccta     >  2:141698‑M1/1‑7 (MQ=255)
                                                                                                 gCCTACGATTCGGGATGAATTAgtaggccggataaggcggtcacgccgcatccggcagtcagtgttatcaaatcaccatattcagcagcagacagcctac    <  2:971283‑M2/100‑79 (MQ=255)
                                                                                                  ccTACGATTCGGGATGAATTAgtaggccggataaggcggtcacgccgcatccggcagtcagtgttatcaaatcaccatattcagcagcagacagcctacc   <  2:214312‑M2/100‑80 (MQ=255)
                                                                                                  cCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCg   <  1:1510722‑M2/99‑1 (MQ=255)
                                                                                                   cTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGt  <  2:2628106/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
AACCATTATCTCGGTGTGCGGTCTGGTAGGCTGTCTGCTGCTGAATATGGTGATTTGATAACACTGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCGT  >  NC_000913/3547818‑3548016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.