New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 72190NA (NA)9 (0.090) 5/164 NT NA noncoding (55/85 nt) REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 72220 NA (NA)noncoding (85/85 nt) REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 147 total aligned reads displayed.

TGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTCAACAACTCATTGGTC  >  NC_000913/72093‑72289
                                                                                                 |                                                                                                   
tGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGg                                                                                                    <  1:1278271‑M1/99‑2 (MQ=255)
  cGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGgtcg                                                                                                 >  1:624834‑M1/1‑96 (MQ=255)
  cGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGgtcg                                                                                                 <  1:2233176‑M1/100‑5 (MQ=255)
  cGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGgtcg                                                                                                 <  2:2530085‑M1/100‑5 (MQ=255)
   gTAGAGGGGTTGGGGTTTAGGAGATGGGCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGGCTACAAAACGCTCTACCCGTAGgtcg                                                                                                 <  1:2264575‑M1/99‑5 (MQ=255)
    tAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGgtcgga                                                                                               <  1:698826‑M1/100‑7 (MQ=255)
    tAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGgtcgga                                                                                               >  1:1971886‑M1/1‑94 (MQ=255)
     aaaGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGgtcggat                                                                                              <  1:1010011‑M1/100‑8 (MQ=255)
      aaGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTCTCAGGCCTACAAAACGCACTACCCGTAGgtcggct                                                                                              >  1:2360535‑M1/1‑92 (MQ=255)
      aaGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATa                                                                                             >  1:117603/1‑100 (MQ=255)
         tGGTTGGGTTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAgg                                                                                          <  1:2808716/100‑1 (MQ=255)
         tGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAgg                                                                                          >  2:1105740/1‑100 (MQ=255)
           gTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGTGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCg                                                                                        <  1:372700/100‑1 (MQ=255)
                ggTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCAc                                                                                   >  1:997608/1‑100 (MQ=255)
                 gTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCAcg                                                                                  >  2:170428/1‑100 (MQ=255)
                 gTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCAcg                                                                                  >  2:3029575/1‑100 (MQ=255)
                       gagaTAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCA                                                                             <  1:12516‑M2/99‑1 (MQ=255)
                         gaTAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAACCGCACTACCCGTAGgtcggatgcggcgtgaacgccttatcc                                                                          <  1:1673884‑M1/100‑28 (MQ=255)
                         gaTAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGgtcggatgcggcgtgaacgccttatcc                                                                          <  2:2925444‑M1/100‑28 (MQ=255)
                         gaTAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGgtcggatgcggcgtgaacgccttatcc                                                                          <  1:716709‑M1/100‑28 (MQ=255)
                         gaTAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGgtcggataaggcgtgaacgccttatcc                                                                          <  1:2500405‑M1/100‑28 (MQ=255)
                         gaTAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCC                                                                          >  1:146366‑M2/1‑100 (MQ=255)
                         gaTAGTCTTGTGCGGGCTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGgtcggatgcggcgtgaacgccttatcc                                                                          <  2:2201675‑M1/100‑28 (MQ=255)
                            aGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGgtcggatgcggcgtgaacgccttatccgac                                                                       <  2:149568‑M1/100‑31 (MQ=255)
                            aGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGAC                                                                       <  1:2195154‑M2/100‑1 (MQ=255)
                            aGTCTTGTGCGGGTTGCCTGATGCGACACTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGAC                                                                       >  1:1410581‑M2/1‑100 (MQ=255)
                             gtgttgtgCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGgtcggatgcggcgtgaacgccttatccgacc                                                                      <  1:1081086‑M1/97‑32 (MQ=255)
                             gTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACa                                                                      >  2:2379760/1‑100 (MQ=255)
                              tCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAg                                                                     <  2:715957/100‑1 (MQ=255)
                               cTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGt                                                                    >  2:696040/1‑100 (MQ=255)
                                  gttttgtaggcctgataagacgcggcaagcgtcgcatcaggcCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCa                                                                 >  2:1021083‑M2/43‑100 (MQ=255)
                                  gtgCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCa                                                                 <  1:1105772/100‑1 (MQ=255)
                                   tgCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCAt                                                                >  2:2419424/1‑100 (MQ=255)
                                   tgCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCAt                                                                <  1:2639454/100‑1 (MQ=255)
                                   tgCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCAt                                                                <  1:3037076/100‑1 (MQ=255)
                                    gCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATa                                                               <  2:908888/100‑1 (MQ=255)
                                     cGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATAc                                                              >  1:652971/1‑100 (MQ=255)
                                      tgtaggcctgataagacgcggcaagcgtcgcatcaggcCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACt                                                             >  2:1232879‑M2/39‑100 (MQ=255)
                                         ttGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTa                                                            <  1:119967/98‑1 (MQ=255)
                                          tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAAcc                                                         <  2:1892933/100‑1 (MQ=255)
                                            cctgataagacgcggcaagcgtcgcatcaggcCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCg                                                       >  1:1918825‑M2/33‑100 (MQ=255)
                                            CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCg                                                       <  2:2216038‑M1/100‑1 (MQ=255)
                                             CTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGt                                                      >  2:117605‑M1/1‑100 (MQ=255)
                                             CTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGt                                                      <  2:394890‑M1/100‑1 (MQ=255)
                                             CTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGt                                                      >  1:2889905‑M1/1‑100 (MQ=255)
                                                   cGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGgtcggatgcggcgtgaacgccttatccgacctacgggtagtgcgttttgtagg                                                <  2:332877‑M1/100‑54 (MQ=255)
                                                    gACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATcccc                                               <  2:780193/100‑1 (MQ=255)
                                                    gACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATcccc                                               <  2:1918843/100‑1 (MQ=255)
                                                     aCGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGCTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCa                                              >  1:349415/1‑100 (MQ=255)
                                                       gCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAAt                                            <  1:1532429/100‑1 (MQ=255)
                                                       gCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAAt                                            <  2:1134990/100‑1 (MQ=255)
                                                        cTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATa                                           >  2:2341869/1‑100 (MQ=255)
                                                             cgcgTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGcc                                      <  1:768716/100‑1 (MQ=255)
                                                              gcgTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCg                                     >  2:2467556/1‑100 (MQ=255)
                                                               cgccTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGa                                    <  2:3040150/97‑1 (MQ=255)
                                                                 tCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAg                                  <  2:1054309/100‑1 (MQ=255)
                                                                 tCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAg                                  <  1:648859/100‑1 (MQ=255)
                                                                 tCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAg                                  <  2:1249562/100‑1 (MQ=255)
                                                                  cTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGc                                 >  1:3032509/1‑100 (MQ=255)
                                                                    tATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCAc                               >  2:1668911/1‑100 (MQ=255)
                                                                    tATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCAc                               >  1:1211195/1‑100 (MQ=255)
                                                                     atcaggcCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACt                              >  2:179122‑M2/8‑100 (MQ=255)
                                                                     atcaggcCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACt                              >  2:1902588‑M2/8‑100 (MQ=255)
                                                                      tcatgcCTACAAAACCCACTACCCGTAGGCTGGATAAGGCGTTTACGCCGCATCCGACAGTTCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTc                             <  1:1180354‑M2/94‑1 (MQ=255)
                                                                       caggcCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGaagcagatc                            >  1:2040221‑M2/6‑96 (MQ=255)
                                                                       caggcCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCg                            >  1:2440697‑M2/6‑100 (MQ=255)
                                                                        aggaCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGc                           <  2:2865306‑M2/96‑1 (MQ=255)
                                                                         ggcCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGcc                          <  2:624839‑M2/97‑1 (MQ=255)
                                                                          gcCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCt                         >  1:543891‑M2/3‑100 (MQ=255)
                                                                           ccTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACctacgggtagtgcgttttgtaggcctgataagacgcggcaagcgtcg                        <  2:332877‑M2/100‑48 (MQ=255)
                                                                           cCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCtt                        <  2:2093816‑M2/99‑1 (MQ=255)
                                                                           cCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCtt                        >  1:167203‑M2/2‑100 (MQ=255)
                                                                           cCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCtt                        >  2:489857‑M2/2‑100 (MQ=255)
                                                                            cTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTa                       >  2:1981384/1‑100 (MQ=255)
                                                                              aCAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTAcc                     <  2:1200123/100‑1 (MQ=255)
                                                                              aCAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTAcc                     <  2:207822/100‑1 (MQ=255)
                                                                                  aaCGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTc                 <  1:2642615/100‑1 (MQ=255)
                                                                                    cGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTCCCGCTca                >  2:2859679/1‑99 (MQ=255)
                                                                                    cGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTcaa               <  2:1638999/100‑1 (MQ=255)
                                                                                     gCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTcaac              <  1:1307826/100‑1 (MQ=255)
                                                                                     gCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTcaac              <  1:1818257/100‑1 (MQ=255)
                                                                                      cACTACCCGTAGGTCGGATAAGGCGTTCACGCAGCCTCCGACAGTGCATACTAACCCGTAATCCCGAATAGTGACGAAGCACTCGCCTTACCGCTcaaca             >  1:1126963/1‑100 (MQ=38)
                                                                                        cTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTCaacaac           >  1:162117/1‑100 (MQ=255)
                                                                                         tACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGACGCACTCGCCTTCCCGCTCaaccac           >  1:2805466/1‑99 (MQ=255)
                                                                                         tACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTCAACAACt          <  2:178128/100‑1 (MQ=255)
                                                                                           cccGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATGCCCAATAGTGCCGAAGCACTCGCCTTACCGCTCAACAACTCa        >  1:2141817/1‑100 (MQ=255)
                                                                                           cccGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTCAACAACTCa        <  2:2603836/100‑1 (MQ=255)
                                                                                           cccGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTCAACAACTCa        >  1:2204603/1‑100 (MQ=255)
                                                                                           cccGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTCAACAACTCa        >  2:791882/1‑100 (MQ=255)
                                                                                             cGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTCAACAACTCAtt      <  2:1981588/100‑1 (MQ=255)
                                                                                             cGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTCAACAACTCAtt      >  2:491467/1‑100 (MQ=255)
                                                                                              gTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTCAACAACTCATTg     <  2:1349405/100‑1 (MQ=255)
                                                                                                aGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTCAACAACTCATTGGt   <  1:195754/100‑1 (MQ=255)
                                                                                                aGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTCAACAACTCATTGGt   >  2:44930/1‑100 (MQ=255)
                                                                                                 ggTCGGATAAGGCGTTCACGCCGCATCCGACctacgggtagtgcgttttgtaggcctgataagacgcggcaagcgtcgcatcaggcaacccgcacaacac  <  1:1081086‑M2/100‑70 (MQ=255)
                                                                                                 ggTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGTACTCGCCTTACCGCTCAACAACTCATTGGTc  >  1:2622228/1‑100 (MQ=255)
                                                                                                 ggTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTCAACAACTCATTGGTc  >  2:1148201/1‑100 (MQ=255)
                                                                                                 ggTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTCAACAACTCATTGGTc  <  1:955335/100‑1 (MQ=255)
                                                                                                 ggTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTCAACAACTCATTGGTc  >  1:287497/1‑100 (MQ=255)
                                                                                                 ggTCGGATAAGGCCTTCACGCCGCAGCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTCACCAACTCATTGGTc  <  1:2275129/100‑1 (MQ=255)
                                                                                                 |                                                                                                   
TGCGTAAAGTGGTTGGGGTTTAGGAGATAGTCTTGTGCGGGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAACGCACTACCCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGTGCATACTAACCCGTAATCCCCAATAGTGCCGAAGCACTCGCCTTACCGCTCAACAACTCATTGGTC  >  NC_000913/72093‑72289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.