New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3525557NA (NA)11 (0.120) 4/164 NT NA noncoding (80/98 nt) RIP251 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP251 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 3525568 NA (NA)noncoding (91/98 nt) RIP251 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP251 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

TTTGCTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3525452‑3525557
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAAACAA  <  NC_000913/3525568‑3525470
                                                                                                                                                                                                             
TTTGCTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAG                                                                                                           <  1:938398/100‑1
  TGCTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCC                                                                                                         <  2:8973/100‑1
  TGCTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCC                                                                                                         >  2:2350352/1‑100
  TGCTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCC                                                                                                         >  2:1482552/1‑100
  TGCTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCC                                                                                                         <  2:1266382/100‑1
    CTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTG                                                                                                       >  2:2522106/1‑100
    CTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTG                                                                                                       >  1:689326/1‑100
    CTGACAAAGTGCACTTGGTTATGCCGGATACGGTGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCATAAACCCCATAAGCCTG                                                                                                       <  1:848323/100‑1
     TGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGA                                                                                                      <  2:1439551/100‑1
      gaaAAAGCGCACTTGTTTATGCCGGATACGGCGTGAACGCGGTATCCGGCGAACAAAATTGTGAAAACTCAATAAATGGCAGAAACCCCATAAG                                                                                                           >  1:2426284/4‑94
      GACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGAT                                                                                                     >  2:1889053/1‑100
      GACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGAT                                                                                                     >  1:321111/1‑100
       ACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCACTAAATTGCAGAAATCCCATAAGCCTGAT                                                                                                     >  1:2686998/1‑99
                          gcaGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATGCACAATGTTTATCAGGCTT                                                                                 <  1:2684523/97‑1
                          GCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATGCACAATGTTTATCAGGCTT                                                                                 <  1:1130953/100‑1
                                                                                            CCCATAAGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCCCGATTTTGTTAGCCGGATAACGCGTTCACG                     >  1:2222262/1‑94
                                                                                            CCCATAAGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTAT               >  2:1811231/1‑100
                                                                                            CCCATAAGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTAT               >  1:1875492/1‑100
                                                                                             CCATAAGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATC              >  2:944432/1‑100
                                                                                             CCATAAGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATC              >  2:738324/1‑100
                                                                                             CCATAAGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATC              >  2:482896/1‑100
                                                                                             CCATAAGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATC              >  1:143075/1‑100
                                                                                             CCATAAGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATC              >  2:1770100/1‑100
                                                                                             CCATAAGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATC              >  1:284948/1‑100
                                                                                                  AGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCA         >  1:1321274/1‑100
                                                                                                   GCCTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCAT        >  2:1758282/1‑100
                                                                                                   GCCTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACCCCGTATCCGGCAT        <  1:1799569/100‑1
                                                                                                    CCTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATA       >  1:2700305/1‑100
                                                                                                     CTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAA      >  2:2764599/1‑100
                                                                                                      TGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAAA     <  1:820758/100‑1
                                                                                                      TGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAAA     >  1:752305/1‑100
                                                                                                       GATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAAAC    >  2:1889830/1‑100
                                                                                                        ATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAAACA   <  1:2832912/100‑1
                                                                                                        ATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACACCGTATCCGGCATAAACA   <  1:1117544/100‑1
                                                                                                         TGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAAACAA  >  2:1398742/1‑100
                                                                                                                                                                                                             
TTTGCTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3525452‑3525557
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAAACAA  <  NC_000913/3525568‑3525470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.