| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4637531 | 87 (0.840) | 9 (0.100) | 7/162 | NT | 9.5% | coding (836/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB |
| ? | NC_000913 | = 4637546 | 93 (0.990) | coding (851/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
AAAGTATGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4637426‑4637531‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcggaCCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTTCCC < NC_000913/4637546‑4637449 AAAGTATGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGC < 1:235981/100‑1AAAGTATGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGACCTAAAAAGCCCACTGGCGGCGATTCGTGGAGC < 1:216397/100‑1 AGTATGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGG > 1:1767583/1‑100 AGTATGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGG > 2:1605092/1‑100 TGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGA > 1:735965/1‑100 AAACTATATTGAGCAGTATGTTTACGTATTACCTCAGGGGCTAAAAAGACCACTGGCCGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCC < 1:796481/99‑1 AAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCCG < 2:789958/100‑1 AACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCCGC < 1:393769/100‑1 AACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACGGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCC < 1:1870903/98‑1 ATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCCGCTCCA < 1:1488689/100‑1 TATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCCGCTCCAC < 2:2478754/100‑1 ATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCCGCTCCAC < 1:2821073/99‑1 TGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCCGCTCCACGAA < 2:2688455/100‑1 GAGCAGTATGTTTACGCATTAACACATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCCGCTCCACGAAT < 2:2601735/100‑1 CGGACCTTCGCGTATAATTTCCGCCGCTCCCCGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTGTTTC < 1:2320559/100‑1 GACCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTTCCC < 2:2330172/100‑1 GACCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTTCCC < 2:2795715/100‑1 GACCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTTCCC < 2:768293/100‑1 GACCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTTCC < 1:788578/99‑1 AAAGTATGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4637426‑4637531‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcggaCCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTTCCC < NC_000913/4637546‑4637449 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |