| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1062411 = | NA (NA) | 6 (0.060) | 6/166 | NT | NA | noncoding (5/134 nt) | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 1062444 = | NA (NA) | noncoding (38/134 nt) | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
CGGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1062515‑1062411‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAA > NC_000913/1062444‑1062542 CGGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTT < 2:291351/100‑1CGGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTT > 2:2460706/1‑100 GTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCA < 2:1118492/100‑1 CTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGG > 2:776120/1‑100 CTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGG > 2:776024/1‑100 CTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGG > 2:607602/1‑100 TACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGC > 1:2629074/1‑100 TACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGC > 2:440850/1‑100 TACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGC > 2:1919619/1‑100 CCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAAT > 2:749362/1‑100 AATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTT > 2:2627493/1‑100 ATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCGTTG > 1:2510503/1‑100 GCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTG > 1:1680244/1‑98 GATGCGACGCTAAACGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACC > 1:2818605/1‑100 TGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGG > 1:600834/1‑100 TCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCC < 1:2512773/100‑1 CAGGCATTATTGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCG < 2:2610361/100‑1 GGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACGGGTTAAGATGCGTCATCGCATCCGGC < 1:2625593/100‑1 GGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGC > 2:521099/1‑100 GGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGC > 2:825677/1‑100 GGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGC < 2:1956740/100‑1 GGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGC < 1:2710664/100‑1 GGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGC < 1:227549/100‑1 GGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGC > 1:2057879/1‑100 GCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCA > 1:82833/1‑100 CATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAA > 2:2405747/1‑100 CATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAA > 1:367962/1‑100 CGGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1062515‑1062411‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAA > NC_000913/1062444‑1062542 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |