New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3908387 =NA (NA)9 (0.090) 5/164 NT NA noncoding (1/64 nt) REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3908412 = NA (NA)noncoding (26/64 nt) REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 149 total aligned reads displayed.

AGGGCATGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTC  >  NC_000913/3908290‑3908486
                                                                                                 |                                                                                                   
aGGGCATGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGcc                                                                                                   >  1:2372095/1‑100 (MQ=255)
aGGGCATGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGcc                                                                                                   <  2:1207558/100‑1 (MQ=255)
aGGGCATGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTCTACTCAGGGCAGTTTCCACCATACTCCTTGCAATCTTTTCCTCATCGTGc                                                                                                    >  1:2734161/1‑99 (MQ=255)
 ggtcATGGAATTTGCCGTAGTTGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGcc                                                                                                   <  2:2034704/96‑1 (MQ=255)
 gggCATGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCt                                                                                                  <  2:132753/100‑1 (MQ=255)
 agaggggcgaggggaccgaccgagcgcctttttgactctgtacacggttaacactttgccggatgcggcgtgaacgcctgatccggcctacggtaaGCCt                                                                                                  <  2:463719‑M1/4‑1 (MQ=255)
 agaggggcgaggggaccgaccgagcgcctttttgactctgtacacggttaacactttgccggatgcggcgtgaacgcctgatccggcctacggtaaGCCt                                                                                                  >  1:764719‑M1/97‑100 (MQ=255)
  ggCATGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTg                                                                                                 >  1:307924/1‑100 (MQ=255)
  gaggggcgaggggaccgaccgagcgcctttttgactctgtacacggttaacactttgccggatgcggcgtgaacgcctgatccggcctacggtaaGCCTg                                                                                                 <  1:1060608‑M1/5‑1 (MQ=255)
  gaggggcgaggggaccgaccgagcgcctttttgactctgtacacggttaacactttgccggatgcggcgtgaacgcctgatccggcctacggtaaGCCTg                                                                                                 <  1:455857‑M1/5‑1 (MQ=255)
    ggggcgaggggaccgaccgagcgcctttttgactctgtacacggttaacactttgccggatgcggcgtgaacgcctgatccggcctacggtaaGCCTGAt                                                                                               <  1:1563995‑M1/7‑1 (MQ=255)
     aTGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATg                                                                                              <  2:1202111/100‑1 (MQ=255)
     aTGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATg                                                                                              >  2:638254/1‑100 (MQ=255)
      tGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGc                                                                                             <  2:1367091/100‑1 (MQ=255)
      tGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGc                                                                                             >  2:1060610/1‑100 (MQ=255)
        gAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCAc                                                                                           <  1:1718867/100‑1 (MQ=255)
         aaTTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACt                                                                                          >  2:2330558/1‑100 (MQ=255)
             tGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGc                                                                                      >  1:148278/1‑100 (MQ=255)
              gCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCt                                                                                     <  2:1576628/100‑1 (MQ=255)
               ccGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTa                                                                                    >  2:2904793/1‑100 (MQ=255)
                 gtagtaGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAAt                                                                                  >  1:2052359/1‑100 (MQ=255)
                   agtagAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCa                                                                                <  2:943150/100‑1 (MQ=255)
                     cgagcgcctttttgactctgtacacggttaacactttgccggatgcggcgtgaacgcctgatccggcctacggtaaGCCTGATGCACTTCGCTAATCAgg                                                                              >  1:590555‑M1/77‑100 (MQ=255)
                      agAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGc                                                                             >  1:1076678/1‑100 (MQ=255)
                      agAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGc                                                                             >  2:1382110/1‑100 (MQ=255)
                      agAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGc                                                                             >  2:108227/1‑100 (MQ=255)
                       gAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCt                                                                            <  2:1461335/100‑1 (MQ=255)
                        gcgcctttttgactctgtacacggttaacactttgccggatgcggcgtgaacgcctgatccggcctacggtaaGCCTGATGCACTTCGCTAATCAGGCtt                                                                           >  1:2343552‑M1/74‑100 (MQ=255)
                        gcgcctttttgactctgtacacggttaacactttgccggatgcggcgtgaacgcctgatccggcctacggtaaGCCTGATGCACTTCGCTAATCAGGCtt                                                                           >  1:2899056‑M1/74‑100 (MQ=255)
                         aGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTa                                                                          >  2:820730/1‑100 (MQ=255)
                         aGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTa                                                                          >  2:1712602/1‑100 (MQ=255)
                          gTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTAc                                                                         >  1:1482136/1‑100 (MQ=255)
                            tCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCg                                                                       <  1:2732053/100‑1 (MQ=255)
                             tttttgactctgtacacggttaacactttgccggatgcggcgtgaacgcctgatccggcctacggtaaGCCTGATGCACTTCGCTAATCAGGCTTAcc                                                                        >  2:1736940‑M1/69‑98 (MQ=255)
                             tttttgaccctgtacacggttaacactttgcgggatgcggcgtgaacgcctgatccggcctacggtaaGCCTGATGCACTTCGCTAATCAGGCTTAcc                                                                        >  1:645445‑M1/69‑98 (MQ=255)
                             cAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGt                                                                      >  2:2650357/1‑100 (MQ=255)
                             cAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGt                                                                      >  2:2123992/1‑100 (MQ=255)
                               aaTTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAg                                                                    >  2:2702106/1‑100 (MQ=255)
                                aTTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAgg                                                                   <  1:2293404/100‑1 (MQ=255)
                                aTTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAgg                                                                   <  2:2608522/100‑1 (MQ=255)
                                  tACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGcc                                                                 >  2:2694064/1‑100 (MQ=255)
                                    cGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTAC‑‑TAGGCCGGAt                                                             <  2:45263/100‑1 (MQ=255)
                                       aCCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATc                                                            <  2:1209324/100‑1 (MQ=255)
                                       aCCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTGTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATc                                                            <  1:235006/100‑1 (MQ=255)
                                        ccTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCCCTTCGCTAATCAGGCTTACCGTAGGCCGGATCa                                                           >  1:2518007/1‑100 (MQ=255)
                                        ccTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCa                                                           <  2:795725/100‑1 (MQ=255)
                                        ccTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCa                                                           >  1:511153/1‑100 (MQ=255)
                                        ccTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCa                                                           <  2:147221/100‑1 (MQ=255)
                                          tGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAgg                                                         >  1:1638615/1‑100 (MQ=255)
                                          tGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAgg                                                         <  2:2055473/100‑1 (MQ=255)
                                             aTTTTACTCGGGGCAGTTTCAACCATACTCATTTCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCg                                                       >  1:2515741/1‑99 (MQ=255)
                                              ttttACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGtg                                                     >  2:68650/1‑99 (MQ=255)
                                               tttACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGAtgcggcgtga                                                    <  1:1833237/100‑10 (MQ=255)
                                               tttACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTc                                                    <  1:743841/100‑1 (MQ=255)
                                                   cTCGGGGCGGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCAcgc                                                <  2:1433936/100‑1 (MQ=255)
                                                    tCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGtgaacgcc                                               <  1:68649/100‑8 (MQ=255)
                                                    tCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCAcgcc                                               <  2:1851626/100‑1 (MQ=255)
                                                         gCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATc                                          >  2:1388061/1‑100 (MQ=255)
                                                            gTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCgg                                       >  2:848772/1‑100 (MQ=255)
                                                             tttCAACCCTACTCATTGCCATCTTTTCCTCATCGTGCCTGATGCCCTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGc                                      <  2:541933/100‑1 (MQ=255)
                                                             tttCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGc                                      <  2:1431348/100‑1 (MQ=255)
                                                             tttCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGc                                      <  2:2610571/100‑1 (MQ=255)
                                                              ttCAACCATACTCATTGCAATCTTTTCCTGATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAAGCGTTCACGCCGCATCCGGc                                      >  1:1275040/1‑99 (MQ=255)
                                                              ttCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATGCGGCGTGAACGCCTGATCCGGcc                                     <  2:879176/100‑2 (MQ=37)
                                                                cAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCaaa                                   >  2:2484841/1‑100 (MQ=255)
                                                                cAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCaaa                                   >  2:687421/1‑100 (MQ=255)
                                                                  aCCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAgt                                 >  2:2792259/1‑100 (MQ=255)
                                                                  aCCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAgt                                 >  1:543255/1‑100 (MQ=255)
                                                                    cATACTCATTGCAATCTTTTCCTCATCGTTCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCCGATCAGGCGTTCACGCCACATCCGGCAAAgtgt                               <  1:1750277/100‑1 (MQ=255)
                                                                    cATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAgtgt                               <  2:1847460/100‑1 (MQ=255)
                                                                    cATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAgtgt                               <  1:680817/100‑1 (MQ=255)
                                                                      tACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTa                             <  2:374254/100‑1 (MQ=255)
                                                                        cTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAAc                           <  1:2435615/100‑1 (MQ=255)
                                                                         tCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCGCGCCGCATCCGGCAAAGTGCTaa                            <  1:2290289/98‑1 (MQ=255)
                                                                         tCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAAcc                          <  2:2237297/100‑1 (MQ=255)
                                                                         tCATTCCTATCGTTTCCTCATCGTGCCTGTTGTACTTCGCTAATCCGGCTTACCGTCGGTCGGATCAGGCGTTCGCGCCGCAGCCGGCAAGGTGTTAAc                           <  1:87957/99‑1 (MQ=25)
                                                                          cATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCg                         <  1:2066504/100‑1 (MQ=255)
                                                                             tGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCgtgt                      <  2:266651/100‑1 (MQ=255)
                                                                               cAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTAc                    >  2:1797043/1‑100 (MQ=255)
                                                                               cAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTAc                    <  2:1493002/100‑1 (MQ=255)
                                                                               cAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTAc                    >  2:394429/1‑100 (MQ=255)
                                                                               cAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTAc                    <  2:543256/100‑1 (MQ=255)
                                                                                aaTCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACa                   <  2:781752/100‑1 (MQ=255)
                                                                                 aTCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACag                  <  2:25767/100‑1 (MQ=255)
                                                                                 aTCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACag                  <  1:2178987/100‑1 (MQ=255)
                                                                                 aTCTTTCCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACag                  >  1:66661/1‑100 (MQ=255)
                                                                                   cTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACagag                <  1:2838393/100‑1 (MQ=255)
                                                                                    ttttCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGt               <  1:2568501/100‑1 (MQ=255)
                                                                                    tttcCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGt               <  2:575268/100‑1 (MQ=255)
                                                                                       tCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCaa            >  1:2806309/1‑100 (MQ=255)
                                                                                       tCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCa             <  1:1885711/99‑1 (MQ=255)
                                                                                         ctcctcGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCGTCCGGCAAAGTGTTAACCGTGTACAGAGTCaaa           <  1:1741061/99‑1 (MQ=255)
                                                                                          tCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCaaaaa         >  1:1248372/1‑100 (MQ=255)
                                                                                          tCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCaaaaa         >  1:1400719/1‑100 (MQ=255)
                                                                                            aTCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAgg       <  1:2619434/100‑1 (MQ=255)
                                                                                             tCGTGCCTGATGCACTTCGCTAATCAGGCTTGCCGTATGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGgc      <  1:1960596/100‑1 (MQ=255)
                                                                                               gTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGgcgc    >  1:781979/1‑100 (MQ=255)
                                                                                                tGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCt   <  1:1593256/100‑1 (MQ=255)
                                                                                                 GCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCtc  <  2:1952723‑M1/100‑1 (MQ=255)
                                                                                                 GCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCtc  <  2:1776809‑M1/100‑1 (MQ=255)
                                                                                                 |                                                                                                   
AGGGCATGGAATTTGCCGTAGTAGAAGTTCAAATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTC  >  NC_000913/3908290‑3908486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.