New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 277706NA (NA)6 (0.060) 5/164 NT NA noncoding (32/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 277737 NA (NA)noncoding (63/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 144 total aligned reads displayed.

CCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGAT  >  NC_000913/277607‑277805
                                                                                                     |                                                                                                   
ttctggcggatgcggcataacgttttgtggttttgtaggccggataaggcgcttgtgccgccatccggcaatGCCTGATAAGCGCAGCGC‑‑ATCAGGCAtt                                                                                                     >  1:228113‑M1/73‑100 (MQ=255)
 cACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTg                                                                                                    >  2:574172‑M1/1‑99 (MQ=255)
   cGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTgcc                                                                                                  <  1:1865205‑M1/100‑4 (MQ=255)
   cGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTgcc                                                                                                  >  2:674466‑M1/1‑97 (MQ=255)
      cTGCGGATATCACCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTgccgga                                                                                               >  2:383558‑M1/1‑94 (MQ=255)
       tGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTgccggat                                                                                              <  1:333882‑M1/100‑8 (MQ=255)
        gCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTgccggat                                                                                              <  1:2341411‑M1/99‑8 (MQ=255)
         cGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATgg                                                                                            >  1:1811894/1‑100 (MQ=255)
          ggATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATggc                                                                                           <  1:1442026/100‑1 (MQ=255)
            atatCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATggcgg                                                                                         <  2:354600/100‑1 (MQ=255)
              cggcataacgttttgtggttttgtaggccggataaggcgcttgtgccgccatccggcaatgcctgataagcgcagcgcatcaggcATTGCCGGATggcgg                                                                                         <  2:295122‑M2/15‑1 (MQ=255)
              atCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGca                                                                                       <  2:2727799/100‑1 (MQ=255)
               tCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGcac                                                                                      <  1:2557509/100‑1 (MQ=255)
                cgccgcGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGcaca                                                                                     >  1:1217419/1‑100 (MQ=255)
                cgccgcGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGcaca                                                                                     <  1:259369/100‑1 (MQ=255)
                cgccgcGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGcaca                                                                                     >  2:657061/1‑100 (MQ=255)
                 gccgcGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACaa                                                                                    <  2:616858/100‑1 (MQ=255)
                 gccgcGTCAAAAGCGCAAAACCAAGGGTTTGTCGGGGCTACCTCGTTCCTTGTACGCCTGTTAAGAACAGCCC‑‑TTCAGCCATTGCCGGATGGCGGCACaa                                                                                    >  1:1046237/1‑100 (MQ=255)
                    gcgTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAgcg                                                                                 <  1:738579/100‑1 (MQ=255)
                    gcgTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAgcg                                                                                 >  2:921065/1‑100 (MQ=255)
                    gcgTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAgcg                                                                                 <  1:1323424/100‑1 (MQ=255)
                      gTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCCTTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGcc                                                                               <  1:1854367/100‑1 (MQ=255)
                      gTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGcc                                                                               >  2:2435239/1‑100 (MQ=255)
                        tAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCtt                                                                             >  2:2000261/1‑100 (MQ=255)
                         aaaaGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTA                                                                            <  1:87757‑M2/100‑1 (MQ=255)
                          aaaGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTgccggataaggcgcttgtgccgccat                                                                           >  2:1918757‑M1/1‑74 (MQ=255)
                              cgcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTgccggataaggcgcttgtgccgccatccgg                                                                       >  1:2242575‑M1/1‑70 (MQ=255)
                              cgcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGG                                                                       >  1:411081‑M2/1‑100 (MQ=255)
                               gcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTgccggataaggcgcttgtgccgccatccggc                                                                      <  1:2334882‑M1/100‑32 (MQ=255)
                                cgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGcc                                                                     <  1:2052302/100‑1 (MQ=255)
                                   aGCTGAGGGTTTATCGGGTCTACATCGTCCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTgccggataaggcgcttgtgccgccatccggcaatg                                                                  <  2:2242585‑M1/100‑36 (MQ=255)
                                    gCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACa                                                                 >  1:2255254/1‑100 (MQ=255)
                                    gCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATCGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACa                                                                 >  2:2044378/1‑100 (MQ=255)
                                     cTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaa                                                                >  2:115969/1‑100 (MQ=255)
                                     cTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaa                                                                >  2:2749819/1‑100 (MQ=255)
                                      tGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaaa                                                               >  2:2572567/1‑100 (MQ=255)
                                       gAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaaaa                                                              >  1:1487741/1‑100 (MQ=255)
                                        aGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAc                                                             <  1:405032/100‑1 (MQ=255)
                                        aGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAc                                                             <  2:1698652/100‑1 (MQ=255)
                                         gggTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAcc                                                            <  1:2436092/100‑1 (MQ=255)
                                           gTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACcac                                                          >  2:2003202/1‑100 (MQ=255)
                                           gTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACcac                                                          >  1:461284/1‑100 (MQ=255)
                                            tttATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACcaca                                                         <  1:1382773/100‑1 (MQ=255)
                                             ttATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACaa                                                        >  2:2543653/1‑100 (MQ=255)
                                              tATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACaaa                                                       >  1:875977/1‑100 (MQ=255)
                                                tCGGGTCTACATCGTTCATTGTAGGCTTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAAc                                                     <  1:1783601/100‑1 (MQ=255)
                                                     tCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTAt                                                <  2:689746/100‑1 (MQ=255)
                                                       tACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGc                                              >  2:48410/1‑100 (MQ=255)
                                                         ccgccatccggcaatGCCTGAT‑‑GCGCTGCGCTTATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCg                                            <  2:295122‑M1/85‑1 (MQ=255)
                                                           tCGTTCATTGTAGGCCGGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCa                                          <  1:2878848/100‑1 (MQ=255)
                                                               tCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCg                                      >  1:1290685/1‑100 (MQ=255)
                                                                 cggcaatGCCTGAT‑‑GCGCTGCGCTTATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGcc                                    <  1:1573741‑M1/93‑1 (MQ=255)
                                                                 aTTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGcc                                    <  2:1588072/100‑1 (MQ=255)
                                                                 aTTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGcc                                    >  2:1217673/1‑100 (MQ=255)
                                                                 aTTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGcc                                    <  2:1290687/100‑1 (MQ=255)
                                                                  ttGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCa                                   <  2:1086586/100‑1 (MQ=255)
                                                                  ggcaatGCCTGAT‑‑GCGCTGCGCTTATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCa                                   <  1:595096‑M1/94‑1 (MQ=255)
                                                                   ggTAGGGCTGATAAGGGCAGCGC‑‑TGGAGGCATTGCCGGAGGGCGGCACAAGCGCCTTATCCGGCGTACAAAACCAACAAAGGTTGGGCCGCATCCGCCa                                   <  1:2469607/98‑1 (MQ=25)
                                                                    gTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGa                                 >  2:1206889/1‑100 (MQ=255)
                                                                    gTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCAACAAAACCACAAAACGTTATGCCGCATCCGCCAGa                                 >  2:1827391/1‑100 (MQ=255)
                                                                      aGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaac                               <  1:700733/100‑1 (MQ=255)
                                                                      aGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaac                               <  2:1881335/100‑1 (MQ=255)
                                                                       ggCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCTGGATGGCGGCACAAGCGCATTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCAGCCAGaaca                              >  1:2402863/1‑100 (MQ=255)
                                                                       ggCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaaca                              >  2:2530430/1‑100 (MQ=255)
                                                                       aatgcctgatgcgctgcgcttatcaggcATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTGCAAAACCACAAAACGTTATGCCGCATCCGCCAGa                                 >  2:1344011‑M2/29‑99 (MQ=255)
                                                                       aatgcctgatgcgctgcgcttatcaggcATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGa                                 >  2:2561914‑M2/29‑99 (MQ=255)
                                                                        atgcctgatgcgctgcgcttatcaggcATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaac                               >  2:66210‑M2/28‑100 (MQ=255)
                                                                        GCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaa                             >  2:2289183‑M1/1‑100 (MQ=255)
                                                                         tgcctgatgcgctgcgcttatcaggcATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaaca                              >  2:1158283‑M2/27‑100 (MQ=255)
                                                                          CTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaaac                           >  1:634833‑M1/1‑100 (MQ=255)
                                                                          CTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaaac                           <  1:1129449‑M1/100‑1 (MQ=255)
                                                                           cctgatgcgctgcgcttatcaggcATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaaa                            >  1:1028997‑M2/25‑100 (MQ=255)
                                                                            GATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaaaca                          >  1:626078‑M1/1‑99 (MQ=255)
                                                                            GATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACAt                         <  2:1145963‑M1/100‑1 (MQ=255)
                                                                             ATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATg                        <  2:1379917‑M1/100‑1 (MQ=255)
                                                                              TAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGc                       <  2:1889534‑M1/100‑1 (MQ=255)
                                                                               aaGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCCTCCGCCAGAACACACATGcc                      >  1:1715370/1‑100 (MQ=255)
                                                                                agtgcagcgc‑‑aTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCg                     >  1:342268/4‑100 (MQ=255)
                                                                                 gcgcagcgc‑‑aTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGt                    <  1:2730394/100‑1 (MQ=255)
                                                                                 gcgcagcgc‑‑aTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGt                    >  2:598519/1‑100 (MQ=255)
                                                                                 gcgcagcgc‑‑aTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGt                    <  2:2308561/100‑1 (MQ=255)
                                                                                  cgcagcgc‑‑aTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTa                   <  1:801708/100‑1 (MQ=255)
                                                                                  cgcagcgc‑‑aTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTa                   <  2:2387317/100‑1 (MQ=255)
                                                                                       cgc‑‑aTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGCACAAACATGCCGTACgga               >  1:1878796/1‑99 (MQ=255)
                                                                                       cgc‑‑aTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggan              <  1:1613172/100‑2 (MQ=255)
                                                                                         c‑‑aTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggatgg            <  2:622347/100‑1 (MQ=255)
                                                                                            atcaggcATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggatgga           >  1:1062603‑M2/8‑100 (MQ=255)
                                                                                             tcaggcATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggatggat          <  2:875979‑M2/94‑1 (MQ=255)
                                                                                              caggcATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGAtt         <  2:647340‑M2/95‑1 (MQ=255)
                                                                                                 ggaTTGCCGGATGACGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCa      >  2:1968547/3‑100 (MQ=255)
                                                                                                  cATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatggacgatgtagacccgataaaccctcagct     <  2:2242585‑M2/100‑66 (MQ=255)
                                                                                                  cATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCaa     <  1:1568869‑M2/99‑1 (MQ=255)
                                                                                                  cATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCaa     >  1:2755710‑M2/2‑100 (MQ=255)
                                                                                                   aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagctt    <  1:2200209‑M2/100‑67 (MQ=255)
                                                                                                   aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagctt    <  1:1918749‑M2/100‑67 (MQ=255)
                                                                                                   aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAg    >  2:254806/1‑100 (MQ=255)
                                                                                                   aTTGCAGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCaa     <  2:105397/99‑1 (MQ=255)
                                                                                                    ttGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGa   <  2:1241903/100‑1 (MQ=255)
                                                                                                     tGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGat  <  2:8993/100‑1 (MQ=255)
                                                                                                     tGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGat  <  2:935376/100‑1 (MQ=255)
                                                                                                     |                                                                                                   
CCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGAT  >  NC_000913/277607‑277805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.