New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 277706NA (NA)6 (0.060) 5/164 NT NA noncoding (32/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 277737 NA (NA)noncoding (63/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 142 total aligned reads displayed.

CGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATACTGCTCGCCGACGTCCGGTTGCAGACG  >  NC_000913/277639‑277836
                                                                                                    |                                                                                                   
cgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGcc                                                                                                    <  1:2052302/100‑1 (MQ=255)
   tcttgaaatccatccgtacggcatgtttgttctggcggatgcggcataacgttttgtggttttgtagGCCGGATGGCGGCACAAGCGCCTTATCCGGCCt                                                                                                   >  1:1081290‑M1/68‑100 (MQ=255)
     cagAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaa                                                                                               >  1:2477760/3‑100 (MQ=255)
     cTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaa                                                                                               >  2:2749819/1‑100 (MQ=255)
      tGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaaa                                                                                              >  2:2572567/1‑100 (MQ=255)
       gAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaaaa                                                                                             >  1:1487741/1‑100 (MQ=255)
        aGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAc                                                                                            <  1:405032/100‑1 (MQ=255)
        aGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAc                                                                                            <  2:1698652/100‑1 (MQ=255)
         gggTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAcc                                                                                           <  1:2436092/100‑1 (MQ=255)
         gggTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAcc                                                                                           >  2:25895/1‑100 (MQ=255)
           tccatccgtacggcatgtttgttctggcggatgcggcataacgttttgtggttttgtagGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAc                                                                                            >  1:1471120‑M1/60‑99 (MQ=255)
           gTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACcac                                                                                         >  1:461284/1‑100 (MQ=255)
           gTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACcac                                                                                         >  2:2003202/1‑100 (MQ=255)
             ttATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACaa                                                                                       >  2:2543653/1‑100 (MQ=255)
              tATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACaaa                                                                                      >  1:875977/1‑100 (MQ=255)
                  gggTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGt                                                                                  >  2:2454450/1‑100 (MQ=255)
                  gggTCTACATCGTTCATTGTAGGCCTGATAAGCGAAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACg                                                                                   >  1:1770165/1‑99 (MQ=255)
                     tCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTAt                                                                               <  2:689746/100‑1 (MQ=255)
                     tCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTAt                                                                               <  1:1334462/100‑1 (MQ=255)
                       tACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATg                                                                              <  2:666500/99‑1 (MQ=255)
                       tACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGc                                                                             >  2:48410/1‑100 (MQ=255)
                         ccgccatccggcaatGCCTGAT‑‑GCGCTGCGCTTATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCg                                                                           <  2:295122‑M1/85‑1 (MQ=255)
                         cATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCg                                                                           <  2:1163495/100‑1 (MQ=255)
                           tCGTTCATTGTAGGCCGGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCa                                                                         <  1:2878848/100‑1 (MQ=255)
                             gTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATc                                                                       >  1:710682/1‑100 (MQ=255)
                              ttCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATcc                                                                      <  1:1817251/100‑1 (MQ=255)
                               tCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCg                                                                     >  1:1290685/1‑100 (MQ=255)
                                 cggcaatGCCTGAT‑‑GCGCTGCGCTTATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGcc                                                                   <  1:1573741‑M1/93‑1 (MQ=255)
                                 aTTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGcc                                                                   <  2:1290687/100‑1 (MQ=255)
                                 aTTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGcc                                                                   >  2:1217673/1‑100 (MQ=255)
                                 aTTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGcc                                                                   <  2:1588072/100‑1 (MQ=255)
                                   tGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATCCCGCATCCGCCAg                                                                 >  2:1638530/1‑100 (MQ=255)
                                   ggTAGGGCTGATAAGGGCAGCGC‑‑TGGAGGCATTGCCGGAGGGCGGCACAAGCGCCTTATCCGGCGTACAAAACCAACAAAGGTTGGGCCGCATCCGCCa                                                                  <  1:2469607/98‑1 (MQ=25)
                                    gTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGa                                                                >  2:1206889/1‑100 (MQ=255)
                                    gTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCAACAAAACCACAAAACGTTATGCCGCATCCGCCAGa                                                                >  2:1827391/1‑100 (MQ=255)
                                      aGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaac                                                              <  2:1881335/100‑1 (MQ=255)
                                      aGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaac                                                              <  1:700733/100‑1 (MQ=255)
                                       ggCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCTGGATGGCGGCACAAGCGCATTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCAGCCAGaaca                                                             >  1:2402863/1‑100 (MQ=255)
                                       aatgcctgatgcgctgcgcttatcaggcATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaa                                                               >  1:228113‑M2/29‑100 (MQ=255)
                                        atgcctgatgcgctgcgcttatcaggcATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaac                                                              >  1:2428731‑M2/28‑100 (MQ=255)
                                        atgcctgatgcgctgcgcttatcaggcATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaac                                                              >  2:66210‑M2/28‑100 (MQ=255)
                                        GCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaa                                                            >  2:2289183‑M1/1‑100 (MQ=255)
                                         tgcctgatgcgctgcgcttatcaggcATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaaca                                                             >  2:1158283‑M2/27‑100 (MQ=255)
                                          CTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaaac                                                          <  1:1129449‑M1/100‑1 (MQ=255)
                                           cctgatgcgctgcgcttatcaggcATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaaa                                                           >  1:1028997‑M2/25‑100 (MQ=255)
                                            GATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCTGCCTACAAAACCACAAAACGTTCTGCCGCATCCGCCAGaacaaaca                                                         <  1:874345‑M1/99‑1 (MQ=255)
                                            GATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaaaca                                                         >  1:626078‑M1/1‑99 (MQ=255)
                                            GATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACAt                                                        <  2:1145963‑M1/100‑1 (MQ=255)
                                             ATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATg                                                       <  2:1379917‑M1/100‑1 (MQ=255)
                                              TAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGc                                                      <  2:1889534‑M1/100‑1 (MQ=255)
                                               aaGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCCTCCGCCAGAACACACATGcc                                                     >  1:1715370/1‑100 (MQ=255)
                                                agcgcagcgc‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCg                                                    >  2:71590/1‑100 (MQ=255)
                                                 gcgcagcgc‑‑aTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGt                                                   <  2:2308561/100‑1 (MQ=255)
                                                 gcgcagcgc‑‑aTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGt                                                   <  1:2730394/100‑1 (MQ=255)
                                                  cgcagcgc‑‑aTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTa                                                  <  2:2387317/100‑1 (MQ=255)
                                                      gcgc‑‑aTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACgga                                              >  1:323616/1‑100 (MQ=255)
                                                         c‑‑aTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggatgg                                           >  2:608876/1‑100 (MQ=255)
                                                         c‑‑aTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggatgg                                           <  2:622347/100‑1 (MQ=255)
                                                            atcaggcATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggatgga                                          >  1:1062603‑M2/8‑100 (MQ=255)
                                                                  cATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatggacgatgtagacccgataaaccctcagct                                    <  2:2242585‑M2/100‑66 (MQ=255)
                                                                  cATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCaa                                    <  1:1568869‑M2/99‑1 (MQ=255)
                                                                  cATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCaa                                    >  1:2755710‑M2/2‑100 (MQ=255)
                                                                   aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagctt                                   <  1:1918749‑M2/100‑67 (MQ=255)
                                                                   aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagctt                                   <  1:2200209‑M2/100‑67 (MQ=255)
                                                                   aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAg                                   >  2:2897095/1‑100 (MQ=255)
                                                                   aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAg                                   >  2:254806/1‑100 (MQ=255)
                                                                   aTTGCAGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCaa                                    <  2:105397/99‑1 (MQ=255)
                                                                    ttGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGa                                  <  2:1241903/100‑1 (MQ=255)
                                                                     tGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGat                                 <  2:935376/100‑1 (MQ=255)
                                                                     tGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGat                                 <  2:8993/100‑1 (MQ=255)
                                                                      gCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagcttcgc                                <  1:2334882‑M2/100‑70 (MQ=255)
                                                                      GCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGata                                <  2:827424‑M1/100‑1 (MQ=255)
                                                                      GCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGata                                <  2:2136882‑M1/100‑1 (MQ=255)
                                                                       ccGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagcttcgcg                               >  1:2242575‑M2/1‑30 (MQ=255)
                                                                         GGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGataata                             <  1:1132691‑M1/100‑1 (MQ=255)
                                                                          gatctcggcACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATAc                            <  2:574240/95‑1 (MQ=255)
                                                                          GATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATAc                            >  2:826714‑M1/1‑100 (MQ=255)
                                                                          GATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATAc                            >  2:1998030‑M1/1‑100 (MQ=255)
                                                                           aTGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagcttcgcgcttt                           >  2:1918757‑M2/1‑26 (MQ=255)
                                                                           ATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATACt                           >  2:2342580‑M1/1‑100 (MQ=255)
                                                                             ggcggcACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATACTGc                         <  2:2461519/100‑1 (MQ=255)
                                                                              gcggcACAAGCGCCTTCTCCGGCCTACAAAACCACACAACGTTATGCCGCATCCGCCACAACACACATGCCCTCAGGATGGATTTCAAGATAATAc                            >  1:451842/1‑96 (MQ=38)
                                                                              gcggcACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATACTGCt                        >  1:419476/1‑100 (MQ=255)
                                                                               cggcACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATAcagatc                       >  1:574239/1‑95 (MQ=255)
                                                                                ggcACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATACTGCTCg                      <  2:694304/100‑1 (MQ=255)
                                                                                  cacaAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATACTGCTCGcc                    <  1:206211/100‑1 (MQ=255)
                                                                                  cacaAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATACTGCTCGcc                    <  2:2418485/100‑1 (MQ=255)
                                                                                   acaAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATACTGCTCGCCg                   <  2:1806287/100‑1 (MQ=255)
                                                                                      aGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATACTGCTCGCCGACg                <  2:2831731/100‑1 (MQ=255)
                                                                                      aGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATACTGCTCGCCGACg                >  2:2176615/1‑100 (MQ=255)
                                                                                       gcgcCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATACTGCTCGCCGACGt               >  2:1356577/1‑100 (MQ=255)
                                                                                         gcCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATACTGCTCGCCGACGTcc             >  1:1649936/1‑100 (MQ=255)
                                                                                         gcCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATACTGCTCGCCGACGTcc             >  2:1084727/1‑100 (MQ=255)
                                                                                         gcCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATACTGCTCGCCGACGTcc             >  1:1367114/1‑100 (MQ=255)
                                                                                         gcCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATACTGCTCGCCGACGTcc             >  2:1084488/1‑100 (MQ=255)
                                                                                          ccTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATACTGCTCGCCGACGTCCg            >  1:604285/1‑100 (MQ=255)
                                                                                              agccggCaatgcctgatgcgctgcgcttagcaggcctacaatgaacgatgtagacccgataaacccgcagcttcgcgcttttaacgcggcgatatccgca        >  2:37300‑M2/3‑7 (MQ=255)
                                                                                              aTCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagcttcgcgcttttaacgcggcgatatccgca        <  1:333882‑M2/100‑94 (MQ=255)
                                                                                                  ggCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagcttcgcgcttttaacgcggcgatatccgcaggcg    <  1:1865205‑M2/100‑98 (MQ=255)
                                                                                                    caatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagcttcgcgcttttaacgcggcgatatccgcaggcgtg  >  2:574172‑M2/1‑1 (MQ=255)
                                                                                                    |                                                                                                   
CGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGATAATACTGCTCGCCGACGTCCGGTTGCAGACG  >  NC_000913/277639‑277836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.