BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1134653	NA (NA)	7 (0.070)	5/164	NT	NA	noncoding (68/98 nt)	RIP100 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP100 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	= 3598495	NA (NA)	7 (0.070)	5/164	NT	NA	noncoding (99/99 nt)	RIP259 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP259 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 119 total aligned reads displayed.

TAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGATCAGTTCATTATGGATCGCC  >  NC_000913/1134555‑1134752

tAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGg                                                                                                    <  1:1024921‑M1/100‑2 (MQ=255)

  aTTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGgcc                                                                                                  >  2:826411‑M1/1‑97 (MQ=255)

   ttaaaaTGATACATTACAAGTATAATTTTCCCTATTCTCAAATTTATCAGTTCTATGAGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCg                                                                                                 <  2:1674110/97‑1 (MQ=255)

   ttGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTAGCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGgccg                                                                                                 <  2:931360‑M1/100‑5 (MQ=255)

    tGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGgccgg                                                                                                <  1:1738101‑M1/100‑6 (MQ=255)

      aaaGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGgccggat                                                                                              >  2:2121391‑M1/1‑93 (MQ=255)

        aGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATaa                                                                                            >  1:1214360/1‑100 (MQ=255)

           aTACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGc                                                                                         <  2:1400392/100‑1 (MQ=255)

              cATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGtt                                                                                      >  1:78830/1‑100 (MQ=255)

              cATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGtt                                                                                      <  2:2287616/100‑1 (MQ=255)

               aTGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGttt                                                                                     >  1:2185261/1‑100 (MQ=255)

                tGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTa                                                                                    >  2:196192/1‑100 (MQ=255)

                  aCAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTAcg                                                                                  >  1:2533708/1‑100 (MQ=255)

                   cAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTAcgc                                                                                 >  2:1658195/1‑100 (MQ=255)

                    aaGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTAcgcc                                                                                <  1:1924006/100‑1 (MQ=255)

                     aGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTAcgccg                                                                               <  1:2403482/100‑1 (MQ=255)

                     aGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTAcgccg                                                                               >  2:151755/1‑100 (MQ=255)

                     aGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTAcgccg                                                                               <  1:1571009/100‑1 (MQ=255)

                      gTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTAcgccgc                                                                              >  2:40208/1‑100 (MQ=255)

                      gTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTAcgccgc                                                                              <  1:2487398/100‑1 (MQ=255)

                       tataAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCa                                                                             <  2:2714517/100‑1 (MQ=255)

                          acgtagCCCGAAGAGCAAGTTTCACGGGTACCTGAGGGCAATCGAAATTTATCGATTTTGCGATCACTTGTAGGCCGGATGCGGCGTAAACGCCTGATcc                                                                          <  1:1258150/95‑1 (MQ=12)

                          aaGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGgccggatgcggcgtaaacgccttatcc                                                                          <  1:334367‑M1/100‑28 (MQ=255)

                          aaGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGgccggatgcggcgtaaacgccttatcc                                                                          <  2:2582948‑M1/100‑28 (MQ=255)

                          aaGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGgccggatgcggcgtaaacgccttatcc                                                                          <  2:914439‑M1/100‑28 (MQ=255)

                           aGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGgccggatgcggcgtaaacgccttatccg                                                                         <  1:2210702‑M1/100‑29 (MQ=255)

                             ttGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                       <  2:1133549/100‑1 (MQ=255)

                             ttGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                       <  2:879320/100‑1 (MQ=255)

                              tGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGAGTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                                      <  2:1424696/100‑1 (MQ=255)

                                cccGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCTATTTTGCGAGCACTTGTAGgccggatgcggcgtaaacgccttatccggcct                                                                     <  2:150318‑M1/99‑33 (MQ=255)

                                cccGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaag                                                                    <  2:2652236/100‑1 (MQ=255)

                                   gATGCGCAAGTTTATCGGGTCTATGTGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaagaag                                                                 <  2:2463338/100‑1 (MQ=255)

                                    aTGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGgccggatgcggcgtaaacgccttatccggcctacaag                                                                <  1:1437060‑M1/100‑38 (MQ=255)

                                      gcgcAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACa                                                              <  1:2864779/100‑1 (MQ=255)

                                       cgcAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACat                                                             >  1:2130326/1‑100 (MQ=255)

                                       cgcAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGCAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACat                                                             >  1:277197/1‑100 (MQ=255)

                                        gcAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACata                                                            <  1:2529272/100‑1 (MQ=255)

                                        gcAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACata                                                            <  1:2745497/100‑1 (MQ=255)

                                        gcAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACata                                                            <  2:881929/100‑1 (MQ=255)

                                           aGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGc                                                         <  1:1323146/100‑1 (MQ=255)

                                            gTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGCAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCa                                                        <  2:277199/100‑1 (MQ=255)

                                              ttATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACt                                                      >  2:402289/1‑100 (MQ=255)

                                               tATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACtt                                                     >  2:1045281/1‑100 (MQ=255)

                                                aTCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACttt                                                    >  2:1203958/1‑100 (MQ=255)

                                                aTCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACttt                                                    >  1:2111859/1‑100 (MQ=255)

                                                aTCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCAAGAAGACATATGCACttt                                                    >  1:404559/1‑100 (MQ=255)

                                                  cGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGt                                                  <  2:2422320/100‑1 (MQ=255)

                                                  cGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGt                                                  >  2:1675094/1‑100 (MQ=255)

                                                   gggTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTc                                                 <  2:2121109/100‑1 (MQ=255)

                                                   gggTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTc                                                 <  2:820135/100‑1 (MQ=255)

                                                   gggTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTc                                                 >  2:749947/1‑100 (MQ=255)

                                                   gggTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTc                                                 >  1:2363758/1‑100 (MQ=255)

                                                    ggTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCa                                                >  2:1078313/1‑100 (MQ=255)

                                                     gTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCAc                                               <  1:620711/100‑1 (MQ=255)

                                                     gTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCAc                                               <  2:2111793/100‑1 (MQ=255)

                                                     gTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCAc                                               <  2:2111866/100‑1 (MQ=255)

                                                     gTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCAc                                               <  2:1211371/100‑1 (MQ=255)

                                                      tCTATGGGGGCAATCGCAATTTATCGATTTTGCGATCACTTGTAGGCCAGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATTCACATTGTCAc                                               <  1:1521479/99‑1 (MQ=37)

                                                         aTGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCCAGAAGACATATGCACTTTGTCACTAAt                                           >  2:2259684/1‑100 (MQ=255)

                                                          tGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATc                                          <  2:1108389/100‑1 (MQ=255)

                                                             gggCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCAc                                       <  2:163727/100‑1 (MQ=255)

                                                             gggCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCAc                                       <  1:2246414/100‑1 (MQ=255)

                                                             gggCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCAc                                       <  2:2528594/100‑1 (MQ=255)

                                                              ggCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACt                                      >  2:61978/1‑100 (MQ=255)

                                                                  aTCGCAATTTATCGATTTTGCGAGCACTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAg                                  <  1:1252335/100‑1 (MQ=255)

                                                                  aTCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAg                                  <  1:2272929/100‑1 (MQ=255)

                                                                  aTCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAg                                  <  1:49837/100‑1 (MQ=255)

                                                                     gCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGAc                               >  2:1835574/1‑100 (MQ=255)

                                                                      cAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACa                              <  1:2341709/100‑1 (MQ=255)

                                                                       aaTTTCTCGACGTTGCGACCCCTTGTAGACCGTATAAGGCGTTTACGCCGCATCTGGCAAGAAGACATATGCACTTTGGCACCAGTCCACTAc                                    <  1:2558362/93‑1 (MQ=21)

                                                                       aaTTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACAt                             >  1:2141182/1‑100 (MQ=255)

                                                                         tttATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACAttt                           <  1:2864462/100‑1 (MQ=255)

                                                                          ttATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACAtttt                          <  1:1384732/100‑1 (MQ=255)

                                                                           tATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTa                         <  2:2135105/100‑1 (MQ=255)

                                                                           tATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTa                         <  1:1811555/100‑1 (MQ=255)

                                                                             tCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATg                       <  2:446762/100‑1 (MQ=255)

                                                                             tCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATg                       >  2:1877789/1‑100 (MQ=255)

                                                                              cGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGa                      <  1:2792902/100‑1 (MQ=255)

                                                                              cGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGa                      >  1:2300985/1‑100 (MQ=255)

                                                                               gATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGAt                     >  1:344522/1‑100 (MQ=255)

                                                                               gATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGAt                     >  2:2639382/1‑100 (MQ=255)

                                                                               gATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGAt                     >  2:1125061/1‑100 (MQ=255)

                                                                                aTTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGATc                    <  2:1845047/100‑1 (MQ=255)

                                                                                 ttttGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGATCa                   >  2:2877640/1‑100 (MQ=255)

                                                                                  tttGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGATCAg                  >  1:573623/1‑100 (MQ=255)

                                                                                   ttGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGATCAGt                 >  1:198043/1‑100 (MQ=255)

                                                                                   ttGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGATCAGt                 <  1:245306/100‑1 (MQ=255)

                                                                                   ttGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTCTATGATCAGt                 <  2:546172/100‑1 (MQ=255)

                                                                                    tGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGATCAGtt                >  2:378492/1‑100 (MQ=255)

                                                                                     gCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGATCAGTTc               <  1:1203956/100‑1 (MQ=255)

                                                                                       gAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGATCAGTTCAt             >  1:2620228/1‑100 (MQ=255)

                                                                                       gAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGATCAGTTCAt             >  2:1351171/1‑100 (MQ=255)

                                                                                         gCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGATCAGTTCATTa           <  1:2244525/100‑1 (MQ=255)

                                                                                         gCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGATCAGTTCATTa           <  2:271495/100‑1 (MQ=255)

                                                                                              tGTAGGCCGGATCAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGATCAGTTCATTATGGAt      >  2:1916244/1‑100 (MQ=255)

                                                                                               gTAGGCCGGCTAAGGCGTTTACGCCCCGTCGGGCAAGAAGACATATGCACTTTCTAACTAATCCACTACCGGACATTTTATGATCAGTTCATTATGCATc     >  1:2739093/1‑100 (MQ=255)

                                                                                               gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGATCAGTTCATTATGGATc     <  1:1853447/100‑1 (MQ=255)

                                                                                                  ggCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGATCAGTTCATTATGGATCGcc  <  2:479003/100‑1 (MQ=255)

                                                                                                  ggCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGATCAGTTCATTATGGATCGcc  >  1:1646162/1‑100 (MQ=255)

                                                                                                  ggCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGATCAGTTCATTATGGATCGcc  >  1:503718/1‑100 (MQ=255)

TAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAGAAGACATATGCACTTTGTCACTAATCCACTACAGGACATTTTATGATCAGTTCATTATGGATCGCC  >  NC_000913/1134555‑1134752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.