BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	857633 =	NA (NA)	3 (0.030)	3/162	NT	NA	noncoding (18/98 nt)	RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	4441401 =	NA (NA)	3 (0.030)	3/162	NT	NA	noncoding (9/98 nt)	RIP335 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP335 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 115 total aligned reads displayed.

AGTGAACCGGCATTTTCAGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTACGCCGCATCAGGCATAGACAAAG  >  NC_000913/4441302‑4441500

aGTGAACCGGCATTTTCAGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATAc                                                                                                     <  2:1830409/100‑1 (MQ=255)

 gTGAACCGGCATTTTCAGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACg                                                                                                    >  1:2236649/1‑100 (MQ=255)

 gTGAACCGGCATTTTCAGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACg                                                                                                    >  1:2654653/1‑100 (MQ=255)

   gAACCGGCATTTTCAGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCt                                                                                                  <  2:2308217/100‑1 (MQ=255)

     aCCGGCATTTTCAGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTAt                                                                                                <  1:2404493/100‑1 (MQ=255)

     aCCGGCATTTTCAGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTAt                                                                                                <  1:883310/100‑1 (MQ=255)

      ccGGCATTTTCAGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATg                                                                                               >  2:925780/1‑100 (MQ=255)

       cGGCATTTTCAGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGc                                                                                              <  1:2153465/100‑1 (MQ=255)

         gCATTTTCAGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCg                                                                                            >  1:141508/1‑100 (MQ=255)

         gCATTTTCAGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCg                                                                                            >  1:2581581/1‑100 (MQ=255)

          cATTTTCAGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCg                                                                                            >  1:2416095/1‑99 (MQ=255)

          cATTTTCAGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGa                                                                                           >  2:1430657/1‑100 (MQ=255)

           aTTTTCAGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGAt                                                                                          <  2:2579216/100‑1 (MQ=255)

            ttttCAGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGAtn                                                                                         <  1:214720/100‑2 (MQ=255)

            gtctatgcctgatgcggcgtaaacgacttaccaggcctacaaaatcgtccaaattcaatatattgcaaggactgcgtagGCCTGATACGCTATGCCGATc                                                                                         >  1:315645‑M1/80‑100 (MQ=255)

             tttCAGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGCTc                                                                                         <  2:194379/99‑1 (MQ=255)

             tttCAGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCa                                                                                        <  1:1935547/100‑1 (MQ=255)

              ttCAGTGGCTAGTATAGCATAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAg                                                                                       >  2:785170/1‑100 (MQ=255)

               tCAGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAgg                                                                                      <  1:107308/100‑1 (MQ=255)

                atgcctgatgcggcgttaacgccttatccggcctacaaagtcctgcagattcaatatattgcaggtactgcgtaggcctgatgCGCTACGCTTATCAGGc                                                                                     <  2:1716213‑M2/17‑1 (MQ=255)

                 tgcctgatgcggcgttaacgccttatccggcctacaaagtcctgcagattcaatatattgcaggtactgcgtaggcctgatgCGCTACGCTTATCAGGcc                                                                                    <  1:1456607‑M2/18‑1 (MQ=255)

                 tgcctgatgcggcgtaaacgacttaccaggcctacaaaatcgtccaaattcaatatattgcaaggactgcgtagGCCTGATACGCTATGCCGATCAGGcc                                                                                    >  2:2139427‑M1/75‑100 (MQ=255)

                 aGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCGAAACTGCCTGATACGCTATGCCGATCAGGcc                                                                                    <  2:2638269/100‑1 (MQ=255)

                   cctgatgcggcgttaacgccttatccggcctacaaagtcctgcagattcaatatattgcaggtactgcgtaggcctgatgCGCTACGCTTATCAGGCCTa                                                                                  <  2:2754524‑M2/20‑1 (MQ=255)

                   cctgatgcggcgtaaacgacttaccaggcctacaaaatcgtccaaattcaatatattgcaaggactgcgtagGCCTGATACGCTATGCCGATCAGGCCTa                                                                                  >  1:1132380‑M1/73‑100 (MQ=255)

                    ggCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTAc                                                                                 >  1:1148413/1‑100 (MQ=255)

                    ggCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTAc                                                                                 >  1:513411/1‑100 (MQ=255)

                    ggCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTAc                                                                                 >  1:2390217/1‑100 (MQ=255)

                    ggCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTAc                                                                                 >  1:1339480/1‑100 (MQ=255)

                     gCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACg                                                                                >  2:2879851/1‑100 (MQ=255)

                      gatgcggcgtaaacgacttaccaggcctacaaaatcgtccaaattcaatatattgcaaggactgcgtagGCCTGATACGCTATGCCGATCAGGCCTACGc                                                                               >  1:1627646‑M1/70‑100 (MQ=255)

                              gCGTCAGGTACTGTAAAGCCGCCATAGGGATAAAATCCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGCCCTACGCAGTCCtt                                                                        >  1:1243647/1‑99 (MQ=38)

                              gCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTg                                                                       <  2:2518209/100‑1 (MQ=255)

                              gCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTg                                                                       <  2:2569430/100‑1 (MQ=255)

                              gCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTg                                                                       >  1:277736/1‑100 (MQ=255)

                              gCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTg                                                                       >  2:234743/1‑100 (MQ=255)

                               cGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGc                                                                      <  1:1477206/100‑1 (MQ=255)

                               cGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGc                                                                      >  1:1635204/1‑100 (MQ=255)

                               cGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGc                                                                      <  2:1802467/100‑1 (MQ=255)

                                gTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCa                                                                     >  1:951586/1‑100 (MQ=255)

                                gTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATAAAAAAAAATGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCa                                                                     <  2:557609/100‑1 (MQ=255)

                                   aGGTACTATAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATAAGGCCTACGCAGTCCTTGCAata                                                                  >  1:2013792/1‑100 (MQ=255)

                                      tACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAatatat                                                               <  2:648862/100‑1 (MQ=255)

                                         tGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGa                                                            >  2:964867/1‑100 (MQ=255)

                                         tGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGAAGTCCTTGCAATATCTTGa                                                            >  2:891580/1‑100 (MQ=255)

                                          gTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGaa                                                           >  1:432354/1‑100 (MQ=255)

                                          gTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGaa                                                           <  2:924363/100‑1 (MQ=255)

                                          gTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGaa                                                           >  2:1943925/1‑100 (MQ=255)

                                           tAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAAt                                                          <  2:1754053/100‑1 (MQ=255)

                                            aaaGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAACTGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAAtt                                                         >  1:1341997/1‑100 (MQ=255)

                                            aaaGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAAtt                                                         >  2:700080/1‑100 (MQ=255)

                                             aaGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAAttt                                                        >  2:2283808/1‑100 (MQ=255)

                                              aGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCTATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTg                                                       <  1:1553026/100‑1 (MQ=255)

                                              aGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTg                                                       >  1:835807/1‑100 (MQ=255)

                                               gccgccAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTgn                                                      <  1:1098241/100‑2 (MQ=255)

                                               gccgccAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTgg                                                      <  1:896103/100‑1 (MQ=255)

                                               cttacaaaatcgtccaaattcaatatattgcaaggactgcggagGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTgg                                                      >  1:2206444‑M1/45‑100 (MQ=255)

                                                   ccAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGa                                                  >  2:1832627/1‑100 (MQ=255)

                                                     agagGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGAtt                                                >  1:79474/1‑100 (MQ=255)

                                                        gggTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTg                                             <  2:653742/100‑1 (MQ=255)

                                                         ggTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGTTATTCCTATCAGGACTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGt                                            <  1:335144/100‑1 (MQ=38)

                                                         ggTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGt                                            <  2:2534035/100‑1 (MQ=255)

                                                         ggTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGt                                            >  2:2818621/1‑100 (MQ=255)

                                                          gTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTa                                           >  2:1499132/1‑100 (MQ=255)

                                                          gTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTa                                           >  2:2877158/1‑100 (MQ=255)

                                                          gTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTa                                           >  2:561681/1‑100 (MQ=255)

                                                          gTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTa                                           <  1:2901760/100‑1 (MQ=255)

                                                           ttAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAg                                          <  1:84645/100‑1 (MQ=255)

                                                             aaaaTTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGc                                        >  1:2778253/1‑100 (MQ=255)

                                                               aaTTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCt                                      >  2:1810077/1‑100 (MQ=255)

                                                                aTTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTg                                     <  2:1232952/100‑1 (MQ=255)

                                                                 ttCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTgg                                    >  2:573774/1‑100 (MQ=255)

                                                                 ttCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTgg                                    >  1:2111342/1‑100 (MQ=255)

                                                                   cAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTa                                  >  2:367029/1‑100 (MQ=255)

                                                                   cAGACAGCGGAAAAATGCAAAACTGCCTGATACGGTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTa                                  <  1:2226653/100‑1 (MQ=255)

                                                                    aGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTaa                                 >  1:2219532/1‑100 (MQ=255)

                                                                        aGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTc                              >  1:1126019/1‑99 (MQ=255)

                                                                         gCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGt                            >  1:2388397/1‑100 (MQ=255)

                                                                           tGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGttt                          <  2:1307418/100‑1 (MQ=255)

                                                                            gAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTa                         >  2:2529754/1‑100 (MQ=255)

                                                                            gAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTa                         >  2:88031/1‑100 (MQ=255)

                                                                              aaaaTGCAAAACTGCCTGATACGCTATGCCGATCAGGGCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTAcg                       >  1:1554615/1‑100 (MQ=255)

                                                                              aaaaTGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTAcg                       >  1:493464/1‑100 (MQ=255)

                                                                               aaaTGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTAcgc                      <  2:1017130/100‑1 (MQ=255)

                                                                                aaTGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTAcgcc                     <  1:2529743/100‑1 (MQ=255)

                                                                                     aaaaCTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCGTGCAATATATTTAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTACGCCGCATc                <  1:350611/100‑1 (MQ=255)

                                                                                      aaaCTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTACGCCGCATCa               <  2:2267561/100‑1 (MQ=255)

                                                                                      aaaCTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTACGCCGCATCa               >  1:1049295/1‑100 (MQ=255)

                                                                                        aCTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTACGCCGCATCAgg             <  2:1699175/100‑1 (MQ=255)

                                                                                         cTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTACGCCGCATCAGGc            >  2:289499/1‑100 (MQ=255)

                                                                                           GCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTACGCCGCATCAGGCAt          <  2:331339‑M1/100‑1 (MQ=255)

                                                                                           GCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAAGTTGGACGATTTTGTAGGCCTGGTAAATCGTTTACGCCACATAAGGCAt          <  1:2001885‑M1/100‑1 (MQ=255)

                                                                                            CCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTACGCCGCATCAGGCATa         <  1:620132‑M1/100‑1 (MQ=255)

                                                                                             CTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTACGCCGCATCAGGCATAg        <  1:2736149‑M1/100‑1 (MQ=255)

                                                                                              TGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTACGCCGCATCAGGCATAGa       <  2:851016‑M1/100‑1 (MQ=255)

                                                                                              TGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCAGGTAAGTCGATTACGCAGCAACAGGCATAg        <  1:1711968‑M1/99‑1 (MQ=255)

                                                                                               GATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTACGCCGCATCAGGCATAGAc      >  1:2884595‑M1/1‑100 (MQ=255)

                                                                                                  aCGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTACGCCGCATCAGGCATAGACaaa   <  1:2782566‑M2/99‑1 (MQ=255)

                                                                                                   cGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTACGCCGCATCAGGCATAGACAAag  <  2:1339482/100‑1 (MQ=255)

                                                                                                   cGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATGGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTACGCCGCATCAGGCATAGACaaa   <  2:1635208/99‑1 (MQ=255)

AGTGAACCGGCATTTTCAGTGGCTAGTATAGCGTAAGGTACTGTAAAGCCGCCAGAGGGTTAAAATTCAGACAGCTGAAAAATGCAAAACTGCCTGATACGCTATGCCGATCAGGCCTACGCAGTCCTTGCAATATATTGAATTTGGACGATTTTGTAGGCCTGGTAAGTCGTTTACGCCGCATCAGGCATAGACAAAG  >  NC_000913/4441302‑4441500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.