New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1432761	NA (NA)	8 (0.080)	7/170	NT	NA	coding (351/576 nt)	tfaR	Rac prophage; putative tail fiber assembly protein
	?	NC_000913	= 1432785	NA (NA)					coding (375/576 nt)	tfaR	Rac prophage; putative tail fiber assembly protein

TACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAA  >  NC_000913/1432701‑1432873                                                                                     |                                                                                         tagcTGGTTATCGCCGGAAGGGGAGTTTCAGAAGGGGAACGGCACAGCCTGGGTGAAGGATGCGGAAGCAGAAAAACTGTTCCGGATCCGGGAGTCGgaa                                                                           <  1:1790826/97‑1 (MQ=1)            cgacGGAAGGGGAGTTTCAGAAGTGGAACGGAACAGCCTGGGTGAAGGATAAGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGAGGAAGAAACaaaaaa                                                                <  1:2366701/97‑1 (MQ=1)                       gattttCAGAAGTGCACCGGCACAGCCTGGTTGAAGTATACGGAAGCAGAAAAACTGTTCCCGATCCCGCAGGCTGAAGAAACAAAAAACAACCTGATGc                                                     <  1:2247195/97‑1 (MQ=1)                                                     gagacggATACGGAACCAAAAAAAGTGTCCCGGTTCCGGGAGGAAAAAAAAAAAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCt                         <  1:199864/93‑1 (MQ=1)                                                                          aaccTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGaaa  <  2:551232/97‑1 (MQ=1)                                                                                     |                                                                                         TACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAA  >  NC_000913/1432701‑1432873

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.