New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4587878	NA (NA)	4 (0.050)	3/162	NT	NA	noncoding (7/27 nt)	REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 4587891	NA (NA)					noncoding (20/27 nt)	REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences

AACGCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4587772‑4587878 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggatAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTCGA  <  NC_000913/4587891‑4587793                                                                                                                                                                                                                AACGCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAG                                                                                                            <  1:1628917/100‑1    GCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTCTTTTGAGTGAAATATCAGGCC                                                                                                         >  2:1115736/1‑100    GCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCC                                                                                                         >  1:1907436/1‑100    GCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCC                                                                                                         >  2:2620161/1‑100    GCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCAGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCC                                                                                                         >  1:2263846/1‑100     CCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTTCCGAAACTAAATATAGACTATTTTGAGAGAAATATCAAGCC                                                                                                         >  1:630236/1‑99       TGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGA                                                                                                      >  2:1727605/1‑100                              GAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCT                                                                               <  1:307887/100‑1                              GAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCT                                                                               <  1:968841/100‑1                                AGTAGGGGTTTCTTCACGTTTGTTGAAGGTGTCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTGA                                                                             <  1:696735/100‑1                                      GGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTC                                                                       <  1:2024141/100‑1                                                                                                    GGCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCG         >  1:1090113/1‑100                                                                                                    GGCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCG         >  2:680863/1‑100                                                                                                    GGCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCG         >  2:1018673/1‑100                                                                                                     GCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGT        >  1:1486021/1‑100                                                                                                        GGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTT     >  2:258870/1‑100                                                                                                          ATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTCG   <  2:914949/100‑1                                                                                                           TAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTCGA  <  1:2268694/100‑1                                                                                                                                                                                                                AACGCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4587772‑4587878 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggatAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTCGA  <  NC_000913/4587891‑4587793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.