| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4636330 | 91 (0.930) | 10 (0.110) | 8/164 | NT | 10.9% | coding (324/690 nt) | creB | response regulator in two‑component regulatory system with CreC |
| ? | NC_000913 | = 4636367 | 80 (0.890) | coding (361/690 nt) | creB | response regulator in two‑component regulatory system with CreC | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
TCCGGCGTTACCTGTACTGTTCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4636225‑4636330‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcacccGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAGCCACGTAGTCGTCAGCACCAATTTCCAGCCCAAGCAGGCGATCGA < NC_000913/4636367‑4636269 TCCGGCGTTACCTGTACTGTTCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTT > 1:1363900/1‑100TCCGGCGTTACCTGTACTGTTCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTT < 2:721730/100‑1 CGGCGTTACCTGTACTGTTCCTGACGGCCCGAAGTGAAGAGTTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACTACTACGTGGCTAAACCGTTTTC < 2:189216/100‑1 CGGCGTTACCTGTACTGTTCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTC > 1:2525213/1‑100 CGTTACCTGTACTGTTCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACC < 1:2292283/100‑1 CGTTACCTGTACTGTTCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGATGAAAAATGGTGCTGACGACTACGTGGCTAAACCGTTTTCACC > 1:73704/1‑100 GTTACCTGTACTGTTCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCATTTTCACC < 2:1852047/99‑1 CCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCAGACGCAGTAAGGTGCGCACCCTGG > 2:59758/1‑100 AGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTGCGCACCCTGGCGCACAC < 2:1033447/100‑1 CGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGA < 1:1479834/100‑1 CCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAA < 1:964801/100‑1 GCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACG < 1:1725747/100‑1 GCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACG < 1:87186/100‑1 TTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCC‑‑CGC‑G‑AAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAG < 1:1055466/100‑1 GCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAG < 1:567707/100‑1 GGAAATCGGGGCTGACGACTACGTGGCTAAACCGTTTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAGCCA < 2:462055/100‑1 GCTAAACCGTTTTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAGCCACGTAGTCGTCAGCACCAATTTCCAG < 1:59758/100‑1 TTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAGCCACGTAGTCGTCAGCACCAATTTCCAGCCCAAGCAGGC > 1:796732/1‑100 TTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAGCCACGTAGTCGTCAGCACCAATTTCCAGCCCAAGCAGGC < 1:411109/100‑1 TTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAGCCACGTAGTCGTCAGCACCAATTTCCAGCCCAAGCAGGC < 1:2239684/100‑1 TTCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGCTGAAAACGGTTTAGCCACGTAGTCGTCAGCACCAATTTCCAGCCCAAGCAGGC > 2:2172452/1‑100 TCACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAGCCACGTAGTCGTCAGCACCAATTTCCAGCCCAAGCAGGC < 2:2296001/99‑1 CACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAGCCACGTAGTCGTCAGCACCAATTTCCAGCCCAAGCAGGCGA > 1:2060810/1‑100 ACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAGCCACGTAGTCGTCAGCACCAATTTCCAGCCCAAGCAGGCGAT < 2:2539910/100‑1 ACCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAGCCACGTAGTCGTCAGCACCAATTTCCAGCCCAAGCAGGCGAT > 2:37937/1‑100 CCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAGCCACGTAGTCGTCAGCACCAATTTCCAGCCCAAGCAGGCGATC < 1:2292648/100‑1 CCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAGCCACGTAGTCGTCAGCACCAATTTCCAGCCCAAGCAGGCGATC > 1:2128502/1‑100 CCCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTAGCGGGGTGAAAACGGTTTAGCCACGTAGTCGTCAGCACCAATTTCCAGCCCAAGCAGGCGATC > 1:1868915/1‑100 CCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAGCCACGTAGTCGTCAGCACCAATTTCCAGCCCAAGCAGGCGATCG > 2:2269484/1‑100 CCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAGCCACGTAGTCGTCAGCACCAATTTCCAGCCCAAGCAGGCGATCG < 1:1504193/100‑1 CCGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAGCCACGTAGTCGTCAGCACCAATTTCCAGCCCAAGCAGGCGATCG < 2:980131/100‑1 CGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAGCCACGTAGTCGTCAGCACCAATTTCCAGCCCAAGCAGGCGATCGA > 2:2503253/1‑100 CGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAGCAACGTAGTCGTCAGCACCAATTTCCAGCCCAAGCAGGCGAT < 2:117301/97‑1 TCCGGCGTTACCTGTACTGTTCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4636225‑4636330‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcacccGACGCAGTAAGGTGCGCACCCTGGCGCACACTTCGCGGGGTGAAAACGGTTTAGCCACGTAGTCGTCAGCACCAATTTCCAGCCCAAGCAGGCGATCGA < NC_000913/4636367‑4636269 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |