New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 463633091 (0.930)10 (0.110) 8/164 NT 10.9% coding (324/690 nt) creB response regulator in two‑component regulatory system with CreC
?NC_000913 = 4636367 80 (0.890)coding (361/690 nt) creB response regulator in two‑component regulatory system with CreC
Rejected: Frequency below cutoff threshold.

Only 100 of 112 total aligned reads displayed.

TCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAG  >  NC_000913/4636269‑4636466
                                                                                                  |                                                                                                   
tCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCg                                                                                                    >  2:2503253‑M2/1‑99 (MQ=255)
 cGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCgg                                                                                                   >  2:2269484‑M2/1‑98 (MQ=255)
 cGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCgg                                                                                                   <  1:1504193‑M2/100‑3 (MQ=255)
  gATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCTAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCggg                                                                                                  >  1:1868915‑M2/1‑97 (MQ=255)
  gATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCggg                                                                                                  <  1:2292648‑M2/100‑4 (MQ=255)
   aTCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCgggt                                                                                                 >  2:37937‑M2/1‑96 (MQ=255)
    tCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCgggtg                                                                                                >  1:2060810‑M2/1‑95 (MQ=255)
      gCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCgggtgaa                                                                                              >  1:796732‑M2/1‑93 (MQ=255)
      gCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCgggtgaa                                                                                              <  1:411109‑M2/100‑8 (MQ=255)
      gCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCgggtgaa                                                                                              <  1:2239684‑M2/100‑8 (MQ=255)
      gCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCgggtga                                                                                               <  2:2296001‑M2/99‑7 (MQ=255)
        cTGCTTGGGCTGTAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTgaaga                                                                                            <  1:1086192/100‑1 (MQ=255)
          gCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGaagaag                                                                                          >  2:1046073/1‑100 (MQ=255)
              gggCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTtct                                                                                      >  2:1376543/1‑100 (MQ=255)
              gggCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTtct                                                                                      <  1:606955/100‑1 (MQ=255)
              gggCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTtct                                                                                      <  1:1248927/100‑1 (MQ=255)
                gCTGGAAATTGGTGCTGACGACTACGTGGCTAATCCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTtct                                                                                      <  2:898965/98‑1 (MQ=255)
                gCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCg                                                                                    >  1:85293/1‑100 (MQ=255)
                gCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCg                                                                                    <  2:1963607/100‑1 (MQ=255)
                gCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCg                                                                                    >  1:2115075/1‑100 (MQ=255)
                 cTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCgggtgaaaacggtttagc                                                                                   <  1:59758‑M2/100‑19 (MQ=255)
                 cTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGa                                                                                   >  1:2134417/1‑100 (MQ=255)
                   ggAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACg                                                                                 >  1:380568/1‑100 (MQ=255)
                   ggAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACg                                                                                 <  1:1389845/100‑1 (MQ=255)
                    gAAATTGGTGCTGACGACTACGTGGCTAAACAGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGc                                                                                >  2:311375/1‑100 (MQ=255)
                      aaTTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCg                                                                              <  2:2495475/100‑1 (MQ=255)
                      aaTTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCg                                                                              >  1:1398769/1‑100 (MQ=255)
                         tGGTGTTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCTCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGt                                                                             <  1:895981/98‑1 (MQ=255)
                         tGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGtct                                                                           <  2:2541783/100‑1 (MQ=255)
                           gTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTcc                                                                         >  1:745127/1‑100 (MQ=255)
                           gTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTcc                                                                         >  2:1104155/1‑100 (MQ=255)
                            tGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTccc                                                                        <  1:1907192/100‑1 (MQ=255)
                            tGCTGACGACTACGTGGCTAAACCGTTTTCACCCAGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTccc                                                                        <  1:1183865/100‑1 (MQ=255)
                             gCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCg                                                                       <  2:2386122/100‑1 (MQ=255)
                             gCTGACGACTACGTGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGt                                                                      <  2:816470/100‑1 (MQ=255)
                                gacgacTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCa                                                                    >  2:1950254/1‑100 (MQ=255)
                                        cGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTAtt                                                            >  1:427133/1‑100 (MQ=255)
                                        cGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTAtt                                                            >  2:1279533/1‑100 (MQ=255)
                                          tGGCTAAACCGTTTTCACCCCTCGAAGTGTGCGTCAGGGTGCGCTCCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTAtt                                                            <  1:909162/98‑1 (MQ=255)
                                          tGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCgggtgaaaacggtttagccacgtagtcgtcagccccgatttcc                                                          <  2:462055‑M2/100‑44 (MQ=255)
                                          tGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTgg                                                          <  1:2325582/100‑1 (MQ=255)
                                          tGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCATCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTgg                                                          >  1:2206965/1‑100 (MQ=255)
                                            gCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGAc                                                        >  1:643229/1‑100 (MQ=255)
                                            gCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGAc                                                        <  2:1223946/100‑1 (MQ=255)
                                             cTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCgggtgaaaacggtttagccacgtagtcgtcagcaccaatttccagc                                                       <  1:567707‑M2/100‑47 (MQ=255)
                                             cTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACa                                                       >  2:2242/1‑100 (MQ=255)
                                             cTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACa                                                       >  1:909053/1‑100 (MQ=255)
                                             cTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTCGCGggtgaaaacggtttagccacgtagtcgtcagcaccaatttccagcccaa                                                     <  1:1055466‑M2/100‑50 (MQ=255)
                                               aaaCCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACAtt                                                     <  2:745120/100‑1 (MQ=255)
                                               aaaCCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACAtt                                                     >  1:1531688/1‑100 (MQ=255)
                                                aaCCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACAttt                                                    <  1:1560596/100‑1 (MQ=255)
                                                aaCCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTAGACACCGTCTCCCGTCATCCGTATTGGACAtt                                                     >  1:2304288/1‑99 (MQ=255)
                                                 aCCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACAtttt                                                   >  1:1816458/1‑100 (MQ=255)
                                                 aCCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACAtttt                                                   <  2:755232/100‑1 (MQ=255)
                                                  ccGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTttg                                                  <  1:710066/100‑1 (MQ=255)
                                                  ccGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTttg                                                  >  1:2060702/1‑100 (MQ=255)
                                                   cGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCgggtgaaaacggtttagccacgtagtcgtcagcaccaatttccagcccaagc                                                 <  1:87186‑M2/100‑53 (MQ=255)
                                                   cGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCgggtgaaaacggtttagccacgtagtcgtcagcaccaatttccagcccaagc                                                 <  1:1725747‑M2/100‑53 (MQ=255)
                                                    gTTTTCGCCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTttgaa                                                <  1:1971418/100‑1 (MQ=255)
                                                    gTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTttg                                                  <  1:2556417/98‑1 (MQ=255)
                                                      tttCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCgggtgaaaacggtttagccacgtagtcgtcagcaccaatttccagcccaagcagg                                              <  1:964801‑M2/100‑56 (MQ=255)
                                                       ttCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGGCATTttgaattg                                             <  1:1177512/100‑1 (MQ=255)
                                                       ttCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTttgaatt                                              >  1:2651280/1‑99 (MQ=255)
                                                        tCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCgggtgaaaacggtttagccacgtagtcgtcagcaccaatttccagcccaagcaggcg                                            <  1:1479834‑M2/100‑58 (MQ=255)
                                                         cACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTttgaattgaa                                           <  2:1305534/100‑1 (MQ=255)
                                                         cACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTttgaattgaa                                           >  1:522483/1‑100 (MQ=255)
                                                         cACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTttgaatt                                              <  2:949747/97‑1 (MQ=255)
                                                          aCCCCGCGAAGTGTGTGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCAGTCTCCCATCATCAGTATAGAACAATttgaattgaa                                           >  1:2333316/1‑99 (MQ=255)
                                                           ccccGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTtgaattgaat                                          <  2:1925967/99‑1 (MQ=255)
                                                           ccccGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATtgaatg                                         <  2:2169968/100‑1 (MQ=255)
                                                            cccGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATtgaatga                                        >  2:1941625/1‑100 (MQ=255)
                                                                    gtgtGCGCCAGGGTGCGCAC‑‑‑ACTTCGCGgggtgaaaacggtttagccacgtagtcgtcagcaccaatttccagcccaagcaggcgatcgacctcttcact                             <  2:1033447‑M2/100‑73 (MQ=255)
                                                                     tgtgCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCgcggc                               <  1:147465/100‑1 (MQ=255)
                                                                       tgCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGgcgc                             >  1:700693/1‑100 (MQ=255)
                                                                       tgCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGgcgc                             <  2:427130/100‑1 (MQ=255)
                                                                         cgcCAGTGTGCGTACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAg                           <  1:1773271/100‑1 (MQ=255)
                                                                           ccAGGGTGCGCACCTTACTGCGTCtggtgaaaacggtttagccacgtagtcgtcagcaccaatttccagcccaagcaggcgatcgacctcttcacttcgg                         >  2:59758‑M2/1‑24 (MQ=255)
                                                                           ccAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCTGTCTTGGACATTTTGAATTGAATGAACCCGCGACGCAGAt                         >  1:447993/1‑100 (MQ=255)
                                                                           ccAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCCACCGTCATCCGTATTGGACATTTGGAATTGAATGAACCCGCGGCGCAGa                          >  1:1106552/1‑99 (MQ=255)
                                                                             aGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCa                       <  1:1731010/100‑1 (MQ=255)
                                                                               ngTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGc                     >  2:2149187/2‑100 (MQ=255)
                                                                                gTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCt                    <  2:1209687/100‑1 (MQ=255)
                                                                                  gcgcACCTTACTGAGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTgg                  >  1:1307286/1‑100 (MQ=255)
                                                                                   cgcACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGt                 >  2:93382/1‑100 (MQ=255)
                                                                                    gcACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGtt                <  1:844586/100‑1 (MQ=255)
                                                                                    gcACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGtt                <  2:906991/100‑1 (MQ=255)
                                                                                    gcACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGtt                <  2:700688/100‑1 (MQ=255)
                                                                                     cACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGttt               >  2:1212745/1‑100 (MQ=255)
                                                                                     cACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGttt               >  2:2436270/1‑100 (MQ=255)
                                                                                     cACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGttt               <  2:112817/100‑1 (MQ=255)
                                                                                     cACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGttt               <  2:2239657/100‑1 (MQ=255)
                                                                                     cACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGttt               <  1:645785/100‑1 (MQ=255)
                                                                                         ttACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATAAACCAGCGGCGCAGATCAGCTGGATTGaca           >  1:1999838/1‑100 (MQ=255)
                                                                                         gtACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGacn           <  2:2360931/99‑2 (MQ=255)
                                                                                          tACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGacac          >  2:1344818/1‑100 (MQ=255)
                                                                                            cTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGc        <  2:1398755/100‑1 (MQ=255)
                                                                                             tGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGcc       <  2:643225/100‑1 (MQ=255)
                                                                                                  cGGGTGGAGCAGTTGTCGAAGATGTCTCATGTCATCGGTATTGGACATATTGAATAGAACGAACCCGCGGCGCAGATCAGCTGGTCTGACACCCCAATa   >  2:1814050/1‑99 (MQ=255)
                                                                                                  cGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAg  <  2:2604725/100‑1 (MQ=255)
                                                                                                  cGGGTGAAGAAGTTCTCGACGCCGTATCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTa   >  2:1713305/1‑99 (MQ=255)
                                                                                                  |                                                                                                   
TCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGTGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAG  >  NC_000913/4636269‑4636466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.