New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1286639	NA (NA)	5 (0.050)	5/168	NT	NA	noncoding (46/72 nt)	REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 1286665	NA (NA)					noncoding (72/72 nt)	REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences

ACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGgcccg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1286541‑1286639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCCGACAACTCACCCCGCACCGTGCCCATAAAAAAAC  <  NC_000913/1286665‑1286563                                                                                                                                                                                                            ACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGG                                                                                                        <  1:221099/100‑1   ATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCC                                                                                                      <  2:1197604/100‑1   ATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCC                                                                                                      <  2:2422678/100‑1    TAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGG                                                                                                        <  2:1761220/97‑1                            TTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGATGGCACCACGTTTACCGGGCCT                                                                             <  2:618094/100‑1                               ATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGATGGCACCACGTTTACCGGGCCTACA                                                                          <  1:2408624/100‑1                               ATGGGCACGCTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGCCCTACAGGGGAGGATATTGTAGGCCCCATGGAACCACGGTTACCGGGCCTAC                                                                           <  2:1949089/99‑1                                     ACGGTGCGGGGTGAGTTGTCGGTTGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGATGGCACCACGTTTACCGGGCCTACAATATCC                                                                    <  1:1330386/100‑1                                        GTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGATGCCACCACGTTTACCGGGCCTACAATATCCTCC                                                                 <  1:1782809/100‑1                                                                                                    GCCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCCGACAACTCACCCCGCACCGTGCCCATAAAAA     >  1:2463071/1‑100                                                                                                     CCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCCGACAACTCACCCCGCACCGTGCCCATAAAAAA    <  1:2107878/100‑1                                                                                                      CCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCCGACAACTCACCCCGCACCGTGCCCATAAAAAAA   >  1:1945211/1‑100                                                                                                       CGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCCGACAACTCACCCCGCACCGTGCCCATAAAAAAAC  <  1:1703995/100‑1                                                                                                       CGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCCGACAACTCACCCCGCACCGTGCCCATAAAAAAAC  >  2:2455508/1‑100                                                                                                                                                                                                            ACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGgcccg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1286541‑1286639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCGATGGCACCACGTTTACCGGGCCTACAATATCCTCCCCTGTAGGTCGGATAAGCGAAGCGCATCCGACAACTCACCCCGCACCGTGCCCATAAAAAAAC  <  NC_000913/1286665‑1286563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.