New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1286639	NA (NA)	5 (0.050)	5/168	NT	NA	noncoding (46/72 nt)	REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 1286665	NA (NA)					noncoding (72/72 nt)	REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences

TTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGC  >  NC_000913/1286566‑1286764                                                                                                    |                                                                                                    tttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGC                                                                                                     >  1:2463071‑M2/1‑100 (MQ=255)   tttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGCTATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCaa                                                                                                   <  1:1872956/100‑1 (MQ=255)     tATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCaaaa                                                                                                 >  2:671764/1‑100 (MQ=255)     tATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCaaaa                                                                                                 >  2:2475557/1‑100 (MQ=255)      aTGGGCACGGTGCGGTGTGAGTTGTCGGATTCGATTCGCTTATCCGGCCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAAt                                                                                                <  1:291077/100‑1 (MQ=255)      aTGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAAt                                                                                                >  1:185296/1‑100 (MQ=255)       tGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAAt                                                                                                >  1:1121491/1‑99 (MQ=255)        gggCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTa                                                                                              <  1:1387831/100‑1 (MQ=255)         ngCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAg                                                                                             >  1:1320164/2‑100 (MQ=255)         ggCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAg                                                                                             <  1:1108664/100‑1 (MQ=255)         ggCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAg                                                                                             <  2:1727835/100‑1 (MQ=255)          gttcGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGc                                                                                            <  1:225280/97‑1 (MQ=255)          gCACGGTGCGGGGTGAGTTTTCGGATGCGCTTTGCTTATCCGACCTACAGTGGAGGATATTGTACGCCCGGTATTCGTGTTGCCATCGGGCAAAATTa                                                                                              <  2:2647749/98‑1 (MQ=38)             cGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCg                                                                                         >  2:1604738/1‑100 (MQ=255)              ggTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCgg                                                                                        <  2:1031241/100‑1 (MQ=255)               gTGCGGGGTGAGTTGTCGGATGCGCTTTGTTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCgg                                                                                        <  1:1100440/99‑1 (MQ=255)               gTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGa                                                                                       <  2:954136/100‑1 (MQ=255)                tGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAg                                                                                      >  1:2635709/1‑100 (MQ=255)                 gCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGt                                                                                     <  2:279425/100‑1 (MQ=255)                 gCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGt                                                                                     <  2:830820/100‑1 (MQ=255)                  cGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTa                                                                                    <  1:2128616/100‑1 (MQ=255)                    gggTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAAc                                                                                  >  2:1768703/1‑100 (MQ=255)                    gggTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAAc                                                                                  >  1:1461245/1‑100 (MQ=255)                     ggTGAGTTGTCGGATGCTCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAAc                                                                                  <  1:283749/99‑1 (MQ=255)                           ttGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGtttt                                                                           <  2:892215/100‑1 (MQ=255)                            tGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTg                                                                          <  1:1992859/100‑1 (MQ=255)                             gTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGa                                                                         >  1:316566/1‑100 (MQ=255)                              tCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGat                                                                        <  2:2207614/100‑1 (MQ=255)                              tCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGat                                                                        <  2:1461231/100‑1 (MQ=255)                               cGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGatt                                                                       <  2:182688/100‑1 (MQ=255)                                ggATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGatta                                                                      >  2:844831/1‑100 (MQ=255)                                 gATGCGCTTCGCTTATCCGGCCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGattat                                                                     <  1:340693/100‑1 (MQ=255)                                 gATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGattat                                                                     >  2:1009865/1‑100 (MQ=255)                                   tGCGCTTCGCTTATCGGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTTGTGCCATCGGGAAAAATTAGCTCGGAGTAACAGGTTTTGATTAttt                                                                   <  2:562837/100‑1 (MQ=255)                                   tGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTAttt                                                                   <  1:787723/100‑1 (MQ=255)                                   tGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTAttt                                                                   >  2:2257436/1‑100 (MQ=255)                                   tGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTAttt                                                                   >  2:998541/1‑100 (MQ=255)                                    gcgcTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTAtttn                                                                  <  2:1320151/100‑2 (MQ=255)                                    gcacttcgcttATCCGACCTAAAGGGGAGGATATTGTACGCCCGGTAAACGTGGTGCCATCGTGCAAAATTATCTCTTAGTAAAAGGTTTTGATTAttt                                                                   <  2:562036/96‑1 (MQ=255)                                      gcttcgcttATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAg                                                                <  2:409731/100‑1 (MQ=255)                                       cttcgcttATCCGCCCTACAGGGGAGTATATTGTAGACCCGGGCAACGTGGTGCCATCGGGCAAAATTAGCTCGGATTAACAGGTTTTGATTATTTAAg                                                                <  2:2527273/99‑1 (MQ=255)                                       cttcgcttATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAgg                                                               >  1:1393426/1‑100 (MQ=255)                                       cttcgcttATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAg                                                                <  2:2107853/99‑1 (MQ=255)                                          cgcttATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAg                                                            >  1:2078395/1‑100 (MQ=255)                                           gcttATCCGACCTACAGGGGCGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGc                                                           >  2:1616791/1‑100 (MQ=255)                                           gcttATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAgn                                                           <  2:2003652/100‑2 (MQ=255)                                           gcttATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGc                                                           <  2:2026941/100‑1 (MQ=255)                                             ttATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGa                                                         <  2:1919972/100‑1 (MQ=255)                                             ttATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGa                                                         >  1:1461868/1‑100 (MQ=255)                                                 ccGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGAtggt                                                     >  2:888891/1‑100 (MQ=255)                                                       tACAGGGGAGGATATTGTAGGCCCGGTAAACGTGTTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGTTGGTggg                                               <  2:1394914/100‑1 (MQ=255)                                                       tACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTggg                                               <  1:2475587/100‑1 (MQ=255)                                                       tACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGAATTGATTATTAAAGGAAGCGAtggtggtg                                                 >  1:463705/1‑98 (MQ=255)                                                         cAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGCGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTggggg                                             >  2:1134634/1‑100 (MQ=255)                                                         cAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTggggg                                             <  2:1121481/100‑1 (MQ=255)                                                             ggaggaTATTGTAGGCCCGGTAAACGTGGTGGCATCGGGCctacaatatcctcccctgtaggtcggataagcgaagcgcatccgacaactcaccccgcac                                         <  1:1782809‑M2/100‑61 (MQ=255)                                                             ggaggaTATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAgg                                         <  2:1801804/100‑1 (MQ=255)                                                             ggaggaTATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAgg                                         >  2:1652581/1‑100 (MQ=255)                                                              gatgaTATTGTAGGCCCGGTAAACGTGGTACCATCGCGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTACGGAAGCGATGGTGGTGGGGGAAGGa                                        <  2:2540560/97‑1 (MQ=255)                                                                ggaTATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCctacaatatcctcccctgtaggtcggataagcgaagcgcaaccgacaactcaccccgcaccgt                                      <  1:1330386‑M2/100‑64 (MQ=255)                                                                  atatTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTAc                                    >  1:1234059/1‑100 (MQ=255)                                                                  atatTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTAc                                    >  2:2029497/1‑100 (MQ=255)                                                                   tatTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACt                                   >  2:1143996/1‑100 (MQ=255)                                                                    atTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGTGGAAGGATTACTc                                  >  2:1686283/1‑100 (MQ=255)                                                                      tGTAGGCCCGGTAAACGTGGTGCCATCGGGCctacaatatcctcccctgtaggtcggataagcgaagcgcatccgacaactcaccccgcaccgtgcccat                                <  1:2408624‑M2/100‑70 (MQ=255)                                                                      tGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAg                                <  1:998551/100‑1 (MQ=255)                                                                       gTAGGCCCGGTAACCGTGGTTCCATGGGGCctacaatatcctcccctgtagggcggataagcgaagcgcatccgacaactcaccccgcagcgtgcccat                                <  2:1949089‑M2/99‑70 (MQ=255)                                                                       gTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAgc                               >  2:1547925/1‑100 (MQ=255)                                                                         aGGCCCGGTAAACGTGGTGCCATCGGGCctacaatatcctcccctgtaggtcggataagcgaagcgcatccgacaactcaccccgcaccgtgcccataaa                             <  2:618094‑M2/100‑73 (MQ=255)                                                                           gCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTg                           >  1:2243493/1‑100 (MQ=255)                                                                            cccGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTgc                          <  1:1629138/100‑1 (MQ=255)                                                                            cccGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTgc                          >  1:1642488/1‑100 (MQ=255)                                                                               ggTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTgcgc                        >  2:2096884/1‑99 (MQ=255)                                                                                gTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTgcgcgc                      <  1:1161804/100‑1 (MQ=255)                                                                                 tAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCt                     >  1:2484996/1‑100 (MQ=255)                                                                                  cgatctggtgCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCtt                    <  1:546405/95‑1 (MQ=255)                                                                                     cGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGc                 >  1:1049446/1‑100 (MQ=255)                                                                                     cGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGc                 <  1:1263655/100‑1 (MQ=255)                                                                                     cGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGc                 <  1:2576012/100‑1 (MQ=255)                                                                                       tggtgCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGccc               >  1:42793/1‑100 (MQ=255)                                                                                       gggggCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGccc               >  1:2488608/5‑100 (MQ=255)                                                                                        ggtgCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCttagatcg              >  2:546401/1‑94 (MQ=255)                                                                                        ggtgCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCt              >  2:2219949/1‑100 (MQ=255)                                                                                         gtgCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCtt             >  1:2329015/1‑100 (MQ=255)                                                                                         gcgCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCtt             >  1:1794841/3‑100 (MQ=255)                                                                                           gCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCg           >  2:1589123/1‑100 (MQ=255)                                                                                             cATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCggg         <  2:2265247/100‑1 (MQ=255)                                                                                             cATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCggg         <  1:990586/100‑1 (MQ=255)                                                                                              aTCGGGCTAAATTAGCTCGGAGTAACAGGTTTTGATTATTTTAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCgg          <  1:1726192/98‑1 (MQ=255)                                                                                              aTCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGt        <  2:2635678/100‑1 (MQ=255)                                                                                                cGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCg      <  2:2250587/100‑1 (MQ=255)                                                                                                  ggCctacaatatcctcccctgtaggtcggataagcgaagcgcatccgacaactcaccccgcaccgtgcccataaaaaaaccccgccgaagcagggtctat    <  2:2422678‑M2/100‑98 (MQ=255)                                                                                                  ggCctacaatatcctcccctgtaggtcggataagcgaagcgcatccgacaactcaccccgcaccgtgcccataaaaaaaccccgccgaagcagggtctat    <  2:1197604‑M2/100‑98 (MQ=255)                                                                                                  ggCAAAATTAGCTCGGAGTAACAGGTTTTGAGTATTTAAGGAAGCGATGGTGGTGGGGGCAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCgggacat     >  2:1272562/1‑95 (MQ=255)                                                                                                   gCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTg   >  1:906261/1‑100 (MQ=255)                                                                                                    cctacaatatcctcccctgtaggtcggataagcgaagcgcatccgacaactcaccccgcaccgtgcccataaaaaaaccccgccgaagcagggtctatgt  <  1:221099‑M2/100‑100 (MQ=255)                                                                                                    cctacaatatcctcccctgtaggtcggataagcgaagcgcatccgacaactcaccccgcaccgtgcccataaaaaaaccccgccgaagcagggtcta     <  2:1761220‑M2/97‑97 (MQ=255)                                                                                                    cAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGc  >  2:1957475/1‑100 (MQ=255)                                                                                                    cAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGc  >  1:1672904/1‑100 (MQ=255)                                                                                                    |                                                                                                    TTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATCGGGCAAAATTAGCTCGGAGTAACAGGTTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGC  >  NC_000913/1286566‑1286764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.