| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2097239 = | NA (NA) | 7 (0.080) | 5/162 | NT | NA | noncoding (3/30 nt) | REP143 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP143 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2097265 = | NA (NA) | noncoding (29/30 nt) | REP143 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP143 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
CTACGCAATTACAACGCGAAGTAATCTTTTCGGTTTTAAAGAAAAAGGGCAGGGTGGTGACACCTTGCCCGTTTTTTTGCCGGATGCGGCAACAATATCGCATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2097344‑2097239‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcatccgGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCAC > NC_000913/2097265‑2097362 CTACGCAATTACAACGCGAAGTAATCTTTTCGGTTTTAAAGAAAAAGGGCAGGGTGGTGACACCTTGCCCGTTTTTTTGCCGGATGCGGCAACAATATCG > 2:1292344/1‑100CTACGCAATTACAACGCGAAGTAATCTTTTCGGTTTTAAAGAAAAAGGGCAGGGTGGTGACACCTTGCCCGTTTTTTTGCCGGATGCGGCAACAATATCG < 2:10743/100‑1CTACGCAATTACAACGCGAAGTAATCTTTTCGGTTTTAAAGAAAAAGGGCAGGGTGGTGACACCTTGCCCGTTTTTTTGCCGGATGCGGCAACAATATCG < 2:835362/100‑1 CAATTACAACGCGAAGTAATCTTTTCGGTTTTAAAGAAAAAGGGCAGGGTGGTGACACCTTGCCCGTTTTTTTGCCGGATGCGGCAACAATATCGCATCC < 1:233169/100‑1 CAATTACAACGCGAAGTAATCTTTTCGGTTTTAAAGAAAAAGGGCAGGGTGGTGACACCTTGCCCGTTTTTTTGCCGGATGCGGCAACAATATCGCATCC < 1:1680489/100‑1 CAATTACAACGCGAAGTAATCTTTTCGGTTTTAAAGAAAAAGGGCAGGGTGGTGACACCTTGCCCGTTTTTTTGCCGGATGCGGCAACAATATCGCATCC < 1:1556112/100‑1 CAATTACAACGCGAAGTAATCTTTTCGGTTTTAAAGAAAAAGGGCAGGGTGGTGACACCTTGCCCGTTTTTTTGCCGGATGCGGCAACAATATCGCATCC > 1:1521610/1‑100 CAATTACAACGCGAAGTAATCTTTTCGGTTTTAAAGAAAAAGAGCAGGGTGGTGACACCTTGCCCGTTTTTTTGCCGGATGCGGCAACAATATCGCATCC < 2:1866556/100‑1 TTTTGCCGGATGCGGCAACAATATCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTT > 2:394555/1‑100 TGCCGGATGCGGCAACAATATCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTA > 1:243421/1‑100 GCCGGATGCGGCAACAATATCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAA > 1:828354/1‑100 GCCGGATGCGGCAACAATATCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAA > 1:1334220/1‑100 CCGGATGCGGCAACAATATCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAAT > 2:1900694/1‑100 CCGGATGCGGCAACAATATCGCATCCGGCAAAAAAACGGGCAAGGTATCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAAT > 1:702050/1‑100 GCAACAATATCGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAG > 1:998121/1‑100 ctctTCCGGCAAAAAAACTGGCAAGGTGTCACCTCCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCC < 2:2501745/95‑1 CGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCC < 2:1566289/100‑1 CGCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCC > 1:2428183/1‑100 GCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCC < 1:1103291/100‑1 GCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCC < 2:1680587/100‑1 GCATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCC < 2:911633/100‑1 ATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCTTTACGCCCCAG < 2:1387213/100‑1 ATCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAG < 1:469899/100‑1 TCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGAAATTGCGTAGAGCATAACGCCCCA > 2:1099770/1‑98 TCCGGC‑AAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCA < 2:2467025/100‑1 CCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGAAGAGCATTACGCCCGAGCA > 2:1794694/1‑100 CGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCTTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCAC < 1:1495033/100‑1 CGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCAC < 1:1541332/100‑1 GGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCAC < 2:1160355/99‑1 GGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCAC < 1:1114809/99‑1 CTACGCAATTACAACGCGAAGTAATCTTTTCGGTTTTAAAGAAAAAGGGCAGGGTGGTGACACCTTGCCCGTTTTTTTGCCGGATGCGGCAACAATATCGCATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2097344‑2097239‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcatccgGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCAC > NC_000913/2097265‑2097362 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |