New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3217434 =NA (NA)3 (0.030) 3/164 NT NA noncoding (1/89 nt) REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3217467 = NA (NA)noncoding (34/89 nt) REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 138 total aligned reads displayed.

ATGCACAAATAAAAAAGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCA  >  NC_000913/3217335‑3217533
                                                                                                   |                                                                                                   
actgcattaatcggtatgccggatccggcggttggagcacaatgcctgatgcgatgctggcgcatcttatcaggcctgcggggtgtgtagcgggtgtagg                                                                                                     >  1:790176‑M1/100‑100 (MQ=255)
 tGCACAAATAAAAAAGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGc                                                                                                    >  2:2630180/1‑100 (MQ=255)
 ctgcattaatcggtatgccggatccggcggttggagcacaatgcctgatgcgatgctggcgcatcttatcaggcctgcggggtgtgtagcgggtgtagg                                                                                                     <  2:2303476‑M1/1‑1 (MQ=255)
  tgcattaatcggtatgccggatccggcggttggagcacaatgcctgatgcgatgctggcgcatcttatcaggcctgcggggtgtgtagcgggtgtagGcc                                                                                                   <  2:308317‑M1/3‑1 (MQ=255)
   gcattaatcggtatgccggatccggcggttggagcacaatgcctgatgcgattctggcgcatcttatcaggcctgcggggtgtttagcgggtgtagGCCg                                                                                                  >  2:480563‑M1/97‑100 (MQ=255)
   gcattaatcggtatgccggatccggcggttggagcacaatgcctgatgcgatgctggcgcatcttatcaggcctgcggggtgtgtagcgggtgtagGCCg                                                                                                  <  2:2307052‑M1/4‑1 (MQ=255)
   gcattaatcggtatgccggatccggcggttggagcacaatgcctgatgcgatgctggcgcatcttatcaggcctgcggggtgtgtagcgggtgtagGCCg                                                                                                  <  2:474457‑M1/4‑1 (MQ=255)
   cacaAATAAAAAAGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCg                                                                                                  >  2:326051/1‑100 (MQ=255)
   cacaAATAAAAAAGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCg                                                                                                  >  1:1587144/1‑100 (MQ=255)
   cacaAATAAAAAAGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCg                                                                                                  >  2:812829/1‑100 (MQ=255)
    cattaatcggtatgccggatccggcggttggagcacaatgcctgatgcgatgctggcgcatcttatcaggcctgcggggtgtgtagcgggtgtagGCCgg                                                                                                 >  2:2056910‑M1/96‑100 (MQ=255)
    acaAATAAAAAAGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCgg                                                                                                 <  2:623980/100‑1 (MQ=255)
    acaAATAAAAAAGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCg                                                                                                  <  2:1357179/99‑1 (MQ=255)
     caAATAAAAAAGATCATTGCGGTGATCGACCGCGCCGCTTTTGAGATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGa                                                                                                <  2:2249481/100‑1 (MQ=255)
     attaatcggtatgccggatccggcggttggagcacaatgcctgatgcgatgctggcgcatcttatcaggcctgcggggtgtgtagcgggtgtagGCCGGa                                                                                                >  2:1232860‑M1/95‑100 (MQ=255)
     attaatcggtatgccggatccggcggttggagcacaatgcctgatgcgatgctggcgcatcttatcaggcctgcggggtgtgtagcgggtgtagGCCGGa                                                                                                >  2:1170639‑M1/95‑100 (MQ=255)
      aaaTAAAAAAGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGAt                                                                                               <  2:903649/100‑1 (MQ=255)
      aaaTAAAAAAGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGAt                                                                                               >  2:2170653/1‑100 (MQ=255)
        aTAAAAAAGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGc                                                                                             <  1:1124468/100‑1 (MQ=255)
        aTAAAAAAGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGc                                                                                             >  2:1181546/1‑100 (MQ=255)
         tAAAAAAGATCATTGTGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCg                                                                                            >  2:899761/1‑100 (MQ=255)
         tAAAAAAGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCg                                                                                            <  2:518704/100‑1 (MQ=255)
         tAAAAAAGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCg                                                                                            <  2:1969977/100‑1 (MQ=255)
          aaaaaaGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGa                                                                                           >  2:2042423/1‑100 (MQ=255)
           aaaaaGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGAc                                                                                          >  1:1701226/1‑100 (MQ=255)
           aaaaaGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGAc                                                                                          >  1:285830/1‑100 (MQ=255)
           aaaaaGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGAc                                                                                          >  2:2053245/1‑100 (MQ=255)
             aaaGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGc                                                                                        <  2:2603968/100‑1 (MQ=255)
                gATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTg                                                                                     <  2:1677276/100‑1 (MQ=255)
                   cATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGAcg                                                                                  >  1:1648994/1‑100 (MQ=255)
                       gCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGcc                                                                              <  1:823780/100‑1 (MQ=255)
                       gCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGcc                                                                              <  1:932419/100‑1 (MQ=255)
                       gCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGcc                                                                              <  1:2011169/100‑1 (MQ=255)
                       gCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGcc                                                                              <  2:2110882/100‑1 (MQ=255)
                       gCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGcc                                                                              >  1:2601050/1‑100 (MQ=255)
                       gCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGcc                                                                              >  2:618230/1‑100 (MQ=255)
                        cGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCt                                                                             <  1:936962/100‑1 (MQ=255)
                         ggTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCAAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCt                                                                             >  1:491476/1‑99 (MQ=255)
                          gTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTa                                                                           <  2:1701210/100‑1 (MQ=255)
                            gATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATc                                                                         >  2:2373387/1‑100 (MQ=255)
                             aTCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATcc                                                                        >  2:1475850/1‑100 (MQ=255)
                               cGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCgg                                                                      <  2:1318061/100‑1 (MQ=255)
                                gACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGc                                                                     >  1:2193681/1‑100 (MQ=255)
                                 ggagcacaatgcctgatgcgatgctggcgcatcttatcaggcctgcggggtgtgtagcgggtgtagGCCGGATGCGACGCTTGACGCGCCTTATCCGGcc                                                                    >  1:1194463‑M1/67‑100 (MQ=255)
                                  ccGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCt                                                                   >  1:2303504/1‑100 (MQ=255)
                                   cgcgCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGcc                                                                    <  2:1808531/98‑1 (MQ=255)
                                   cgcgCCGCTTTTGATATTACGAAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTa                                                                  <  1:1903741/100‑1 (MQ=255)
                                    gcgcCGATTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCt                                                                   <  2:19003/98‑1 (MQ=255)
                                      acaatgcctgatgcgatgctggcgcatcttatcaggcttgcggggtgtgtagcgtgtgtagGCCGGTTGCGACGCTTGACGCGCCTTACCCGGCCt                                                                   >  2:55980‑M1/62‑96 (MQ=255)
                                       ccgcTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTa                                                                  <  2:1760471/96‑1 (MQ=255)
                                           ttttGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCt                                                          >  2:611277/1‑100 (MQ=255)
                                           ttttGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCt                                                          >  1:2108966/1‑100 (MQ=255)
                                            tttGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTa                                                         <  1:1429289/100‑1 (MQ=255)
                                              tGATATTACGCAACTGGATTAATCGCCGCATCCGCTAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTaca                                                       <  1:2106230/100‑1 (MQ=255)
                                              tGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTaca                                                       <  2:1416834/100‑1 (MQ=255)
                                              tGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTaca                                                       <  2:1058176/100‑1 (MQ=255)
                                               gATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTacac                                                      <  2:1298690/100‑1 (MQ=255)
                                               gATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTacac                                                      >  2:70916/1‑100 (MQ=255)
                                               gATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTacac                                                      >  2:74530/1‑100 (MQ=255)
                                               gATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTacac                                                      <  2:113559/100‑1 (MQ=255)
                                                  atTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACAcc                                                   <  1:1750009/100‑1 (MQ=255)
                                                   ttACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACAccc                                                  <  2:1975536/100‑1 (MQ=255)
                                                       gCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCa                                              <  1:2200708/100‑1 (MQ=255)
                                                         tcttGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTGGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAgg                                            <  1:395539/97‑1 (MQ=255)
                                                         aaCTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAgg                                            <  1:2260927/100‑1 (MQ=255)
                                                          aCTGGATTAATCTCCGCATCCTCCATTTGCTCTTTTCAATTTCCGTATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAgg                                            <  1:2195877/99‑1 (MQ=25)
                                                            tctagtAATCGCCGCATCCGGCAGTGTCGCGGTGTAATTTCCGAAGGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCt                                         <  2:491922/95‑1 (MQ=37)
                                                            tGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAggaga                                         >  2:395537/1‑97 (MQ=255)
                                                            tGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCt                                         <  1:326053/100‑1 (MQ=255)
                                                             ggATTAATCGCCGCATCCGCCAGTGTCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTg                                        <  2:372282/100‑1 (MQ=255)
                                                             ggATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTg                                        <  2:1905315/100‑1 (MQ=255)
                                                             ggATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTg                                        <  1:718000/100‑1 (MQ=255)
                                                              gATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGa                                       >  2:1917294/1‑100 (MQ=255)
                                                               aTTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGAt                                      <  1:1258874/100‑1 (MQ=255)
                                                               aTTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGAt                                      >  2:756085/1‑100 (MQ=255)
                                                               aTTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGAt                                      <  1:1258882/100‑1 (MQ=255)
                                                                ttAAGCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATa                                     <  2:1565882/100‑1 (MQ=255)
                                                                  aaTCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCAGGCCTGCACCCGCTGCACACCCCGCAGGCCTGATAAg                                   >  2:1786210/1‑100 (MQ=255)
                                                                   aTCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGa                                  >  2:652697/1‑100 (MQ=255)
                                                                    tCGCCGCATCCGCCAGTGGCGGGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGa                                  <  2:2618379/99‑1 (MQ=255)
                                                                    tCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGAt                                 >  2:1856085/1‑100 (MQ=255)
                                                                      gccgcATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTTACGCGCCTTATCCGACCTACACCCGCTACACACCCCGCAGGCCTGATAAGa                                  >  1:785432/1‑97 (MQ=255)
                                                                      gccgcATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCAGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATgc                               >  1:505601/1‑100 (MQ=255)
                                                                      gccgcATCCGCCAGTGGCCCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACAACCACTACACACACCGCAGGCCTGATAAGAtac                               >  1:335170/1‑98 (MQ=21)
                                                                        cgcATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATgcgc                             >  1:91890/1‑100 (MQ=255)
                                                                              cGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAgcat                       >  1:2541999/1‑100 (MQ=255)
                                                                               gCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAgcatc                      <  1:30473/100‑1 (MQ=255)
                                                                               gCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAgcatc                      >  1:1173207/1‑100 (MQ=255)
                                                                               gCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCAGCAGGCCTGATAAGATGCGCCAgcatc                      >  1:730133/1‑100 (MQ=255)
                                                                                ccAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAgcatcg                     <  1:528201/100‑1 (MQ=255)
                                                                                       cgcgGTGCAATTGCCGGATGTGACGCTTGACTCGCCTTATCGGGCCTAAACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAgg              <  1:1251503/100‑1 (MQ=38)
                                                                                       cgcgGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAgg              <  1:2094535/100‑1 (MQ=255)
                                                                                        gcgGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGc             <  2:1173196/100‑1 (MQ=255)
                                                                                         cgGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCa            >  1:1745266/1‑100 (MQ=255)
                                                                                          ggTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCAt           <  1:144810/100‑1 (MQ=255)
                                                                                           gTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCAtt          <  2:105098/100‑1 (MQ=255)
                                                                                                aTTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCt     <  1:1666685/100‑1 (MQ=255)
                                                                                                  tGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTcc   <  1:2605073/100‑1 (MQ=255)
                                                                                                   GCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACTCCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTATGCTCCa  <  2:1422587‑M1/100‑1 (MQ=255)
                                                                                                   GCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCa  >  2:1209006‑M1/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
ATGCACAAATAAAAAAGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCA  >  NC_000913/3217335‑3217533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.