New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4103511 =NA (NA)3 (0.030) 3/164 NT NA noncoding (5/84 nt) REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4103544 = NA (NA)noncoding (38/84 nt) REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 124 total aligned reads displayed.

ATCGAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCG  >  NC_000913/4103412‑4103610
                                                                                                   |                                                                                                   
aTCGAAAAGCTGGACTCGGACGATGCAAAAGCGCCGACTGAGTGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAgg                                                                                                     <  1:788610/100‑1 (MQ=255)
aTCGAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAgg                                                                                                     >  2:941846/1‑100 (MQ=255)
aTCGAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAgg                                                                                                     >  2:1808774/1‑100 (MQ=255)
aTCGAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAgg                                                                                                     >  2:1811192/1‑100 (MQ=255)
 acggctggtgatttggttgccgctgtataagcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGc                                                                                                    >  1:768545‑M1/99‑100 (MQ=255)
  cggctggtgatttggttgccgctgtataagcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGcc                                                                                                   >  2:2114493‑M1/98‑100 (MQ=255)
  cggctggtgatttggttgccgctgtataagcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGcc                                                                                                   >  1:2561646‑M1/98‑100 (MQ=255)
  cGAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGcc                                                                                                   <  2:1748026/100‑1 (MQ=255)
   gAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCt                                                                                                  >  1:1854871/1‑100 (MQ=255)
   gAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCt                                                                                                  >  2:2328563/1‑100 (MQ=255)
   gAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCt                                                                                                  >  2:630626/1‑100 (MQ=255)
   gAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCt                                                                                                  >  1:224350/1‑100 (MQ=255)
    aaaaGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTg                                                                                                 <  2:1817949/100‑1 (MQ=255)
    aaaaGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTg                                                                                                 <  1:1811209/100‑1 (MQ=255)
     ctggtgatttggttgccgctgtataagcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCt                                                                                                  >  2:1678249‑M1/95‑98 (MQ=255)
     ctggtgatttggttgccgctgtataagcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTGa                                                                                                >  2:2378790‑M1/95‑100 (MQ=255)
     aaaGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTg                                                                                                 <  2:2241706/99‑1 (MQ=255)
     aaaGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGa                                                                                                <  1:2198109/100‑1 (MQ=255)
      tggtgatttggttgccgctgtataagcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTGAt                                                                                               >  2:116368‑M1/94‑100 (MQ=255)
      tggtgatttggttgccgctgtataagcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTGAt                                                                                               >  1:1002773‑M1/94‑100 (MQ=255)
      aaGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGAt                                                                                               <  2:319662/100‑1 (MQ=255)
       aGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATa                                                                                              >  2:2031403/1‑100 (MQ=255)
       aGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCCGATa                                                                                              <  1:725152/100‑1 (MQ=255)
         cgggACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCTACGATTTTTCCCGCCGGTTGGGGGGAAAAGAACCCCCGGAGTGTAGGCCTGATAAg                                                                                            <  1:2600012/98‑1 (MQ=255)
          tGGACGCGGACGATGCAAAAGCGCCGCCTGAGCGGCGAGATCGAAGCTTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGa                                                                                           <  2:914207/100‑1 (MQ=255)
          tGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGa                                                                                           <  2:2655141/100‑1 (MQ=255)
          tGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGa                                                                                           <  1:1731108/100‑1 (MQ=255)
          tGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGa                                                                                           <  1:1808791/100‑1 (MQ=255)
          tGGACGCGGACGATGCAAAACCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGa                                                                                           >  2:1617611/1‑100 (MQ=255)
           ggACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGAc                                                                                          <  1:2003694/100‑1 (MQ=255)
           ggACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGAc                                                                                          <  2:1991769/100‑1 (MQ=255)
            gACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACg                                                                                         >  2:173544/1‑100 (MQ=255)
            gACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACg                                                                                         <  1:1272551/100‑1 (MQ=255)
             aCGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGc                                                                                        >  1:1411515/1‑100 (MQ=255)
             aCGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGc                                                                                        >  1:1411308/1‑100 (MQ=255)
               gcgGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTa                                                                                      >  1:1697754/1‑100 (MQ=255)
                 ngACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATc                                                                                    >  2:460403/2‑100 (MQ=255)
                     gATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCg                                                                                <  1:2436063/100‑1 (MQ=255)
                     gATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCg                                                                                >  2:721367/1‑100 (MQ=255)
                       tGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGTCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTc                                                                              <  1:678751/100‑1 (MQ=255)
                       tGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTc                                                                              >  1:1074822/1‑100 (MQ=255)
                       tGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCATGATAAGAAGCTATCAGCGTc                                                                              >  1:509541/1‑100 (MQ=255)
                         cAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTc                                                                              >  2:470465/1‑98 (MQ=255)
                         cAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGc                                                                            >  2:1648413/1‑100 (MQ=255)
                         cAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGc                                                                            >  2:927732/1‑100 (MQ=255)
                          aaaaGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCg                                                                             >  1:2166755/1‑98 (MQ=255)
                          aaaaGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCa                                                                           >  1:1503133/1‑100 (MQ=255)
                            aaGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATc                                                                         <  2:633711/100‑1 (MQ=255)
                              gcgcCGACTGAGCGGCAAGATCGAAGATTTTTCTCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAg                                                                       <  1:615471/100‑1 (MQ=255)
                               gcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTGATAAGACGCTATCAGCGTCGCATCAgg                                                                      >  1:825952‑M1/69‑100 (MQ=255)
                               cgcCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAgg                                                                      <  2:2219718/100‑1 (MQ=255)
                               cgcCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGACCTGATAAGACGCCATCAGCGTCGCATCAg                                                                       >  2:344995/1‑99 (MQ=255)
                                  gagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTGATAAGACGCTATCAGCGTCGCATCAGGCAt                                                                   >  1:1600180‑M1/66‑100 (MQ=255)
                                       gAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGc                                                              >  1:2588089/1‑100 (MQ=255)
                                         gCGGCAAGGTCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCt                                                             <  2:945393/99‑1 (MQ=255)
                                         gCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTc                                                            >  2:2559780/1‑100 (MQ=255)
                                         gCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTc                                                            >  1:2225584/1‑100 (MQ=255)
                                          cGGCAAGATCGAAGATTTTTCCCGCAGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATACTGc                                                              >  2:239473/1‑97 (MQ=255)
                                              aaGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATg                                                       <  2:581518/100‑1 (MQ=255)
                                                gATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGcc                                                     >  1:495071/1‑100 (MQ=255)
                                                gATCGAAGATTTTTCCCGACAGTTGTAGGGAAAATAAGCCCCGGCGTGTAGGCCGGATAAAACGCTATCAGCGTCGCATCAGGAATCCTGCTCAAATGcc                                                     >  2:1413859/1‑100 (MQ=37)
                                                  tCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCgg                                                   <  2:498235/100‑1 (MQ=255)
                                                   cGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGa                                                  >  1:1082588/1‑100 (MQ=255)
                                                     aataTTTTTCCCGCCTGTTTTTTTGAAAATAACCCCCCGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGAt                                                 <  1:2553922/96‑1 (MQ=25)
                                                          ttttCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATgcggcg                                           >  1:2425296/1‑100 (MQ=255)
                                                          ntttCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATgcggcg                                           >  1:2425346/2‑100 (MQ=255)
                                                           tttCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGt                                          <  1:1623317/100‑1 (MQ=255)
                                                            ttCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTa                                         <  1:1235912/100‑1 (MQ=255)
                                                                   cgtttGTGTTGAAAATAATCCCTGGAGTGTTGTTTTGATAATACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCt                                  <  1:1088555/97‑1 (MQ=18)
                                                                       tgtgGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATc                              <  1:2031424/100‑1 (MQ=255)
                                                                        gtgGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCATGTTTTTTTTTTTTTTTTCGGATGCGGCGTAAACGCCTTa                                >  2:1559642/1‑97 (MQ=19)
                                                                         tgGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcct                            >  2:2623394/1‑100 (MQ=255)
                                                                         tgGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcct                            >  1:816346/1‑100 (MQ=255)
                                                                          ggggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctg                           <  2:2590311/100‑1 (MQ=255)
                                                                          ggggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctg                           >  1:679697/1‑100 (MQ=255)
                                                                          ggggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctg                           >  2:396239/1‑100 (MQ=255)
                                                                          ggggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcct                            >  2:2208807/1‑99 (MQ=255)
                                                                           gggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgc                          <  1:1214782/100‑1 (MQ=255)
                                                                             gAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgcct                        <  1:2328592/100‑1 (MQ=255)
                                                                                  tAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCaaa                   <  1:396242/100‑1 (MQ=255)
                                                                                     cccccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGc                >  1:1299782/1‑100 (MQ=255)
                                                                                     cccccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGc                >  2:612848/1‑100 (MQ=255)
                                                                                       cccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGa              >  1:1027303/1‑100 (MQ=255)
                                                                                         cGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAg            <  2:1283494/100‑1 (MQ=255)
                                                                                         cGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAg            <  1:470469/100‑1 (MQ=255)
                                                                                            aGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGttt         <  2:2161244/100‑1 (MQ=255)
                                                                                            aGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGttt         <  2:1854854/100‑1 (MQ=255)
                                                                                            aGTGTAGGCCGGATAAGACGCTATCATCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGAAAATGCGAAGttt         <  2:277564/100‑1 (MQ=255)
                                                                                               gtAGGCCTGATAAGACGCTATCAGCTTCGCATCAGGCATCCTGCTCAAATGCCTGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAc      <  1:1544123/100‑1 (MQ=255)
                                                                                               gtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAc      <  2:378959/100‑1 (MQ=255)
                                                                                               gtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAc      <  2:1601521/100‑1 (MQ=255)
                                                                                               gtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAc      >  1:2436069/1‑100 (MQ=255)
                                                                                               gtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAc      <  2:1289228/100‑1 (MQ=255)
                                                                                               gtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAc      <  1:941855/100‑1 (MQ=255)
                                                                                                tAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGTAAATGCGAAGTTTAACt     <  2:2346717/100‑1 (MQ=255)
                                                                                                tAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACt     >  1:1324340/1‑100 (MQ=255)
                                                                                                 atGCCTGATGCGACGCTGATAGCGTCTTATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTc    <  2:1470666‑M1/98‑1 (MQ=255)
                                                                                                  ggCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCCGCCTGCAAATGCGAAGTTTAACTcc   <  1:2072502/100‑1 (MQ=255)
                                                                                                  ggCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCCGCCTGCAAATGCGAAGTTTAACTcc   >  2:2072479/1‑100 (MQ=255)
                                                                                                   GCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCg  <  1:1939046‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
ATCGAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCG  >  NC_000913/4103412‑4103610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.