New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4103511 =NA (NA)3 (0.030) 3/164 NT NA noncoding (5/84 nt) REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4103544 = NA (NA)noncoding (38/84 nt) REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 107 total aligned reads displayed.

CGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCGTAA  >  NC_000913/4103446‑4103643
                                                                                                  |                                                                                                   
gagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatgcctgataagacgctatcagcgtcgcatcaggcAt                                                                                                    <  2:1470666‑M2/2‑1 (MQ=255)
gagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTGATAAGACGCTATCAGCGTCGCATCAGGCAt                                                                                                    >  1:1600180‑M1/66‑100 (MQ=255)
   cTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCt                                                                                                 >  1:132177/1‑100 (MQ=255)
     gAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGc                                                                                               >  1:2588089/1‑100 (MQ=255)
       gCGGCAAGGTCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCt                                                                                              <  2:945393/99‑1 (MQ=255)
        cGGCAAGATCGAAGATTTTTCCCGCAGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATACTGc                                                                                               >  2:239473/1‑97 (MQ=255)
            aaGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATg                                                                                        <  2:581518/100‑1 (MQ=255)
              gATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGcc                                                                                      >  1:495071/1‑100 (MQ=255)
              gATCGAAGATTTTTCCCGACAGTTGTAGGGAAAATAAGCCCCGGCGTGTAGGCCGGATAAAACGCTATCAGCGTCGCATCAGGAATCCTGCTCAAATGcc                                                                                      >  2:1413859/1‑100 (MQ=37)
               aTCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCg                                                                                     <  1:1701414/100‑1 (MQ=255)
               aTCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCg                                                                                     <  2:2588058/100‑1 (MQ=255)
                tCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCgg                                                                                    <  2:1625473/100‑1 (MQ=255)
                tCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCgg                                                                                    <  2:498235/100‑1 (MQ=255)
                 cGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGa                                                                                   >  1:1082588/1‑100 (MQ=255)
                   aataTTTTTCCCGCCTGTTTTTTTGAAAATAACCCCCCGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGAt                                                                                  <  1:2553922/96‑1 (MQ=25)
                      aTTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATgcgg                                                                              <  2:224348/100‑1 (MQ=255)
                       tttttCCCGCCGGTTGTGGGGAAAATAACCCCTGGAGTGTAGGTCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATgcggc                                                                             <  1:750548/100‑1 (MQ=255)
                        ttttCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATgcggcg                                                                            >  1:2425296/1‑100 (MQ=255)
                        ntttCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATgcggcg                                                                            >  1:2425346/2‑100 (MQ=255)
                         tttCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGt                                                                           <  1:1623317/100‑1 (MQ=255)
                          ttCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTa                                                                          <  1:1235912/100‑1 (MQ=255)
                            cccGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTaaa                                                                        >  2:1926069/1‑100 (MQ=255)
                                 cgtttGTGTTGAAAATAATCCCTGGAGTGTTGTTTTGATAATACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCt                                                                   <  1:1088555/97‑1 (MQ=18)
                                     tgtgGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATc                                                               <  1:2031424/100‑1 (MQ=255)
                                      gtgGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCATGTTTTTTTTTTTTTTTTCGGATGCGGCGTAAACGCCTTa                                                                 >  2:1559642/1‑97 (MQ=19)
                                      gtgGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcc                                                              <  1:1504255/100‑1 (MQ=255)
                                       tgGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcct                                                             >  2:2623394/1‑100 (MQ=255)
                                       tgGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcct                                                             >  1:816346/1‑100 (MQ=255)
                                        ggggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctg                                                            >  2:845256/1‑100 (MQ=255)
                                        ggggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctg                                                            >  1:679697/1‑100 (MQ=255)
                                        ggggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctg                                                            <  2:2590311/100‑1 (MQ=255)
                                        ggggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctg                                                            >  2:396239/1‑100 (MQ=255)
                                        ggggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcct                                                             >  2:2208807/1‑99 (MQ=255)
                                         gggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgc                                                           <  1:1214782/100‑1 (MQ=255)
                                          ggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgcc                                                          <  1:2345168/100‑1 (MQ=255)
                                           gAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgcct                                                         <  1:2328592/100‑1 (MQ=255)
                                                tAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCaaa                                                    <  1:396242/100‑1 (MQ=255)
                                                   cccccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGc                                                 >  2:612848/1‑100 (MQ=255)
                                                   cccccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGc                                                 >  1:1299782/1‑100 (MQ=255)
                                                     cccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGa                                               >  1:1027303/1‑100 (MQ=255)
                                                       cGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAg                                             <  1:470469/100‑1 (MQ=255)
                                                          aGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAGATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGttt                                          <  2:1457986/100‑1 (MQ=255)
                                                          aGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGttt                                          <  2:2161244/100‑1 (MQ=255)
                                                          aGTGTAGGCCGGATAAGACGCTATCATCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGAAAATGCGAAGttt                                          <  2:277564/100‑1 (MQ=255)
                                                            tgtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTaa                                        <  1:2454719/100‑1 (MQ=255)
                                                             gtAGGCCTGATAAGACGCTATCAGCTTCGCATCAGGCATCCTGCTCAAATGCCTGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAc                                       <  1:1544123/100‑1 (MQ=255)
                                                             gtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAc                                       <  2:378959/100‑1 (MQ=255)
                                                             gtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAc                                       <  2:1289228/100‑1 (MQ=255)
                                                             gtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAc                                       <  2:1601521/100‑1 (MQ=255)
                                                             gtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAc                                       <  1:941855/100‑1 (MQ=255)
                                                             gtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAc                                       >  1:2436069/1‑100 (MQ=255)
                                                              tAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGTAAATGCGAAGTTTAACt                                      <  2:2346717/100‑1 (MQ=255)
                                                              tAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACt                                      >  1:1324340/1‑100 (MQ=255)
                                                               atgcctgatgcgacgctgatagcgtcttatcaggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTc                                     >  1:1600180‑M2/36‑100 (MQ=255)
                                                               atGCCTGATGCGACGCTGATAGCGTCTTATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTc                                     <  2:1470666‑M1/98‑1 (MQ=255)
                                                                ggCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCCGCCTGCAAATGCGAAGTTTAACTcc                                    <  1:2072502/100‑1 (MQ=255)
                                                                ggCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCCGCCTGCAAATGCGAAGTTTAACTcc                                    >  2:2072479/1‑100 (MQ=255)
                                                                 gcctgatgcgacgctgatagcgtcttatcaggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCg                                   >  1:929133‑M2/34‑100 (MQ=255)
                                                                 GCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCg                                   <  2:397395‑M1/100‑1 (MQ=255)
                                                                 GCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCg                                   <  1:1939046‑M1/100‑1 (MQ=255)
                                                                  cttGAGAAGACGCGCTTAGCGGCGCATCAGGCATCCGCCTCAAATGCCGTATGCGTCGTAAGCTCCTTATCATGCCTGCAAATGCGAAGTTTAAc                                       <  2:2485241/93‑1 (MQ=255)
                                                                  cctgatgcgacgctgatagcgtcttatcaggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGc                                  >  1:825952‑M2/33‑100 (MQ=255)
                                                                  CCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGc                                  <  1:755720‑M1/100‑1 (MQ=255)
                                                                  CCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTAAACTCCGc                                  <  1:606680‑M1/100‑1 (MQ=255)
                                                                   CTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTTAAATTCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCt                                 >  1:689009‑M1/1‑100 (MQ=255)
                                                                   CTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCt                                 <  2:1680146‑M1/100‑1 (MQ=255)
                                                                   CTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCt                                 >  2:1503118‑M1/1‑100 (MQ=255)
                                                                   CTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCt                                 >  2:1082578‑M1/1‑100 (MQ=255)
                                                                       TAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTtata                             >  2:2156474‑M1/1‑100 (MQ=255)
                                                                          gACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAg                          >  1:770405/1‑100 (MQ=255)
                                                                           aCGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGc                         <  1:192263/100‑1 (MQ=255)
                                                                             gCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCgg                       <  1:721372/100‑1 (MQ=255)
                                                                              cTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGc                      >  1:2172243/1‑100 (MQ=255)
                                                                               tATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCa                     >  1:1229932/1‑100 (MQ=255)
                                                                               tATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCa                     >  1:1230898/1‑100 (MQ=255)
                                                                               tATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCa                     <  1:927741/100‑1 (MQ=255)
                                                                                  cAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGTGGCGTATACGACTTATCCTGCCTGCAACTGCGAAGTTTAGCTCCTCTTATACGGCGGCAAc                   <  2:70446/99‑1 (MQ=25)
                                                                                  cAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAAcc                  >  1:1015772/1‑100 (MQ=255)
                                                                                  cAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAAcc                  <  1:1692714/100‑1 (MQ=255)
                                                                                     cGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCaaa               <  1:2442348/100‑1 (MQ=255)
                                                                                     cGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTACAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCaaa               >  1:181323/1‑100 (MQ=255)
                                                                                      gTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACTCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAAt              <  2:1697738/100‑1 (MQ=255)
                                                                                       tCGCATCAGGTATCCTGCTCAATTGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATc             <  1:384309/100‑1 (MQ=255)
                                                                                       tCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATc             >  1:1299573/1‑100 (MQ=255)
                                                                                        cGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCa            <  2:2178486/100‑1 (MQ=255)
                                                                                        cGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCa            <  1:1680162/100‑1 (MQ=255)
                                                                                         acATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCAc           >  2:638805/2‑100 (MQ=255)
                                                                                          cATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCAcc          >  2:1383952/1‑100 (MQ=255)
                                                                                          cATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCAcc          <  2:1324327/100‑1 (MQ=255)
                                                                                          cATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCAcc          >  2:21056/1‑100 (MQ=255)
                                                                                           atcaggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCa         >  1:1002773‑M2/8‑100 (MQ=255)
                                                                                           atcaggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCa         >  2:116368‑M2/8‑100 (MQ=255)
                                                                                            tcaggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAg        >  2:2378790‑M2/7‑100 (MQ=255)
                                                                                              aggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAg        >  2:1678249‑M2/5‑98 (MQ=255)
                                                                                               ggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCg     >  2:2114493‑M2/4‑100 (MQ=255)
                                                                                               ggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCg     >  1:2561646‑M2/4‑100 (MQ=255)
                                                                                               ggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCg     >  1:1111994‑M2/4‑100 (MQ=255)
                                                                                                gcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCGt    >  1:768545‑M2/3‑100 (MQ=255)
                                                                                                  aTCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCGTaa  >  1:1183110/1‑100 (MQ=255)
                                                                                                  aTCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGAGAAGTTTAACACCGCTTATACAGCGGCAACCAAATCACCAGCCg     <  2:211782/97‑1 (MQ=255)
                                                                                                  |                                                                                                   
CGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCGTAA  >  NC_000913/4103446‑4103643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.