| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4326184 | 70 (0.720) | 12 (0.230) +AGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAG |
5/98 | NT | 23.9% | noncoding (383/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 4374596 | NA (NA) | noncoding (99/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
GTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCC > NC_000913/4326090‑4326253 | gTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATTCGGCCTACGGAgg > 2:1852153/1‑100 (MQ=255)gTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAgg > 1:520435/1‑100 (MQ=38) tGCGGTAATTTGTAGGTCTGATAAGATGCGCAAGCGTCGCATCAGGCAGTTGGGTGTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAgg < 1:510615/99‑1 (MQ=11) cGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTg > 1:729795/1‑100 (MQ=38) cGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACaaattccc < 1:1218966‑M1/100‑9 (MQ=255) gggAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGc > 1:1498451/1‑100 (MQ=38) gggAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGc > 1:1261541/1‑100 (MQ=38) gAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCgn < 2:193015/100‑2 (MQ=38) gAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCgg < 1:1645687/100‑1 (MQ=35) gAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCgg < 1:1645863/100‑1 (MQ=35) gAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCgg < 1:679416/100‑1 (MQ=38) tttGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGaa < 1:1370365/100‑1 (MQ=38) tGTAGGTGTGATAGGATGCTTAAGCGTCGTATCAGGTTGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAtt < 1:1146780/100‑1 (MQ=11) gTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAtt > 1:68213/1‑99 (MQ=38) tAGGCCTGATAAGACGCGCAAGCGTTGCATCAGTCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTg < 1:1308259/100‑1 (MQ=255) tAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTg > 1:2408111/1‑100 (MQ=38) tAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTg > 1:1021075/1‑100 (MQ=38) aGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt < 2:18079/100‑1 (MQ=38) ggCCTGATAAGACGCGCATGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTa < 1:798445/100‑1 (MQ=25) ggCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTa < 2:2275871/100‑1 (MQ=38) gCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAg > 1:2456589/1‑100 (MQ=38) ccTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAgg > 2:1851106/1‑100 (MQ=38) ccTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAgg > 1:1173953/1‑100 (MQ=35) ccTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAgg < 2:321136/100‑1 (MQ=38) ccTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGAGGCGTAAACGCCTTATGCTGCGTACGGCGGGGGCGGGGGTATGTAgg > 2:430919/1‑100 (MQ=11) cccaTAAGGCGCGCATGCCTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt < 2:2105684/93‑1 (MQ=11) cTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGc < 1:982348/100‑1 (MQ=38) gATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCt > 1:1048076/1‑100 (MQ=38) gATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCt > 2:1201140/1‑100 (MQ=38) gATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCt > 1:2372188/1‑100 (MQ=38) aTAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTg < 2:401713/100‑1 (MQ=38) aGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATa < 1:442241/100‑1 (MQ=38) gACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATaa > 2:979978/1‑100 (MQ=35) gACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATaa > 1:733848/1‑100 (MQ=38) gACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCATTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATaa > 2:1700458/1‑100 (MQ=38) cgcgCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGa > 1:89859/1‑100 (MQ=38) cgcgCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGa > 1:2568147/1‑100 (MQ=38) cgcgCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGa > 1:1726161/1‑100 (MQ=38) cgcgCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGa < 1:2227117/100‑1 (MQ=38) cgcgCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGa > 2:2558975/1‑100 (MQ=38) cgcgCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGa > 1:1767675/1‑100 (MQ=38) cgcgCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGa < 1:120852/100‑1 (MQ=38) gcgcAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAc > 2:88050/1‑100 (MQ=38) gcgcAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAc < 1:1220306/100‑1 (MQ=35) cgcAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAcg < 1:2066301/100‑1 (MQ=38) cAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAcgcg < 2:820200/100‑1 (MQ=35) cAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGAGTGCGGGAAATTGTAGACCTGATAAGAcgcg > 1:1115468/1‑100 (MQ=255) cAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAAGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAcgcg > 2:703180/1‑100 (MQ=25) aaGCGTCGCATGAGGCAGTTGGCACTGTTGGCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAg < 2:192472/94‑1 (MQ=16) aGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCa < 1:2037389/100‑1 (MQ=32) aGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCa > 1:1086741/1‑100 (MQ=33) aGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCa < 1:2455197/100‑1 (MQ=33) cGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAg < 2:1145652/100‑1 (MQ=32) gTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGc < 2:2408081/100‑1 (MQ=32) tcccATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCg < 2:776499/97‑1 (MQ=18) tCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCg > 2:1073581/1‑100 (MQ=33) cGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGc > 2:1289916/1‑98 (MQ=32) gCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTc < 1:1753367/100‑1 (MQ=33) gCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTc > 2:849164/1‑100 (MQ=33) gCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAAGAAGGAAGAAGGAATATGTAAGCCTGATAAGACGCGCAAGCGt > 1:768686/1‑99 (MQ=11) cATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCg < 2:77075/100‑1 (MQ=32) tCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTc < 1:1753735/97‑1 (MQ=32) tCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCa > 2:1119731/1‑100 (MQ=33) tCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCa < 1:589544/100‑1 (MQ=33) tCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCa < 1:1201152/100‑1 (MQ=33) cAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCAt > 2:2243242/1‑100 (MQ=33) aGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATc > 2:1137162/1‑100 (MQ=33) ggCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCa > 1:184096/1‑100 (MQ=33) gCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAg < 1:2595009/100‑1 (MQ=33) cAGTTTGCATTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAg < 1:1062914/99‑1 (MQ=12) cAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAgg < 2:629064/100‑1 (MQ=32) cAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAgg < 2:2622602/100‑1 (MQ=32) aGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGc > 1:820927/1‑100 (MQ=32) gTTGCCACTGTTGCCGGATGAGGCGTAAACGCCTTATCCGGCCTACGGAGGGAGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGc > 2:924117/1‑99 (MQ=255) ttGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACagttcattgcaaatccattcaatttcaatgcacgatgtaggcctgattcgctacgcttatcagg < 1:2218218‑M1/100‑65 (MQ=255) ttGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACagttcattgcaaatccattcaatttcaatgcacgatgtaggcctgattcgctacgcttatcagg < 1:2218599‑M1/100‑65 (MQ=255) ttGCCGGATGCAGCGTAAACGCC‑TATCCGGCCTACagttcattgcaaatccattcaatttcaatgcacgatgtaggcctgattcgctacgcttatcagac < 1:1796190‑M1/100‑66 (MQ=255) tGCCGGATGCAGCGTAAACGCCTTATTCGGCCTACtgttcattgcaaatccattcaatttcaatgcacgatgtaggcctgattcgctacgcttatcaggc < 1:31624‑M1/100‑66 (MQ=255) tGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACagttcattgcaaatccattcaatttcaatgcacgatgtaggcctgattcgctacgcttatcaggc < 2:256865‑M1/100‑66 (MQ=255) tGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACagttcattgcaaatccattcaatttcaatgcacgatgtaggcctgattcgctacgcttatcaggc < 1:764020‑M1/100‑66 (MQ=255) tGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACagttcattgcaaatccattcaatttcaatgcacgatgtaggcctgattcgctacgcttatcaggc < 1:1667310‑M1/100‑66 (MQ=255) gCCGGATGCAGCGCAAACGCCTTATCCGGCCTACagttcattgcaaatccattcaatttcaatgcacgatgtaggcctgattcgctacgcttatcaggcc < 1:2570127‑M1/100‑67 (MQ=255) cgggatGCAGCGTAAACGCCGTAGCCGGCCTACagttcgttgcaaatccattcaatttcaatgcacgatgttggcctgattcgctacgcttatcagg < 1:1124135‑M1/95‑65 (MQ=255) ccGGATGCAGCGTAAACGCCTTATCCGGCCTACagttcattgcaaatccattcaatttcaatgcacgatgtaggcctgattcgctacgcttatcaggcct < 1:2427556‑M1/100‑68 (MQ=255) ggATGCAGCGTAAACGCCTTATCCGGCCTACagttcattgcaaatccattcaatttcaatgcacgatgtaggcctgattcgctacgcttatcaggcctac < 1:2593337‑M1/100‑70 (MQ=255) ggATGCAGCGTAAACGCCTTATCCGGCCTACagttcattgcaaatccattcaatttcaatgcacgatgtaggcctgattcgctacgcttatcaggcctac < 1:1491964‑M1/100‑70 (MQ=255) | GTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCC > NC_000913/4326090‑4326253 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |