| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 223623 | 12 (0.120) | 7 (0.080) | 5/168 | NT | 21.1% | intergenic (+215/‑148) | gmhB/rrsH | D,D‑heptose 1,7‑bisphosphate phosphatase/16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 3428937 = | 41 (0.450) | intergenic (‑175/‑299) | rrsD/yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein | |||||
GGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGT > NC_000913/223524‑223722 | ggttcggttGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGC > 2:2483429‑M1/1‑100 (MQ=255) gttcggttGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCa > 2:1978047/1‑100 (MQ=255) cggttGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACt < 1:2495952/100‑1 (MQ=40) cggttGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACt > 1:2366186/1‑100 (MQ=255) ggttGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTg > 1:1270221/1‑100 (MQ=40) ggttGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTg > 1:819558/1‑100 (MQ=40) ggttGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTg > 1:984175/1‑100 (MQ=40) tGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTGctc > 2:2068686/1‑100 (MQ=38) tGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTGctc < 1:600659/100‑1 (MQ=35) aagagagAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTGctc > 2:1976550/4‑100 (MQ=1) gAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTGctct > 2:466323/1‑100 (MQ=35) gAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTGctct > 2:948599/1‑100 (MQ=35) agagAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGTGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTGCTCttt > 2:1415024/1‑100 (MQ=17) agagAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTGCTCttt > 2:671861/1‑100 (MQ=32) agagAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTGCTCttt < 2:905572/100‑1 (MQ=33) gagaAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTGCTCTTTa < 1:432586/100‑1 (MQ=32) gagaAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTGCTCTTTa > 2:2321368/1‑100 (MQ=32) gaAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTGCTCTTTAAc < 1:1386088/100‑1 (MQ=11) ctGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCT‑AAAG‑CGCGTCGCgaggtggcgtatattacgctttcctctttcagagtcaaccctg > 1:1215376‑M1/1‑57 (MQ=255) aaaGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCgaggtggcgtatattacgctttcctctttcagagtcaaccctgaaattcag > 1:351084‑M1/1‑49 (MQ=255) ccACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCgaggtggcgtatattacgctttcctctttcagagtcaaccctgaatttcaggatttttttctcttc > 1:2131265‑M1/1‑34 (MQ=255) cACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCgaggtggcgtatattacgctttcctctttcagagtcaaccctgaatttcaggatttttttctcttcg > 1:1183991‑M1/1‑33 (MQ=255) ccTCGCGACAGTGAGCTGAAAGCCGCGTCGCgaggtggcgtatattacgctttcctctttcagagtcaaccctgaatttcaggatttttctcttcaaccg > 1:1396276‑M1/1‑31 (MQ=255) gcgACAGTGAGCTGAAAGCCGCGTCGCgaggtggcgtatattacgctttcctctttcagagtcaaccctgaatttcaggatttttttctcttcgttgttc > 1:2633760‑M1/1‑27 (MQ=255) gcgACAGTGAGCTGAAAGCCGCGTCGCgaggtggcgtatattacgctttcctctttcagagtcaaccctgaatttcaggatttttttctcttcgttgttc > 1:2636886‑M1/1‑27 (MQ=255) cttaaaGCCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAAt < 2:2277630/96‑1 (MQ=1) gTCGCgaggtggcgtatattacgctttcctctttcagagtcaaccctgaatttcaggatttttttctcttcgttgttccgaccatcctgtgaagtgtttc > 1:2266393‑M1/1‑5 (MQ=255) gTCGCgaggtggcgtatattacgctttcctctttcagagtcaaccctgaatttcaggatttttttctcttcgttgttccgaccatcctgtgaagtgtttc < 2:1641691‑M1/100‑96 (MQ=255) gTCGCgaggtggcgtatattacgctttcctctttcagagtcaaccctgaatttcaggatttttttctcttcgttgttccgaccatcctgtgaagtgtttc < 1:336405‑M1/100‑96 (MQ=255) gTCGCgaggtggcgtatattacgctttcctctttcagactcaaccctgaatttcaggatttttttctcttcgtttttccgaccatcctgagaagtgattc > 1:1746444‑M1/1‑5 (MQ=255) cgcgaggtggcgtatattacgctttcctctttcagagtcaaccctgaatttcaggatttttttctcttcgttgttccgaccatcctgtgaagtgtttcac > 1:175467‑M1/1‑3 (MQ=255) cgcgaggtggcgtatattacgctttcctctttcagagtcaaccctgaattacaggatttttatatcttcgttgttccgaccatcctgtgaagtgtttaa > 1:1418873‑M1/1‑3 (MQ=255) gcgaggtggcgtatattacgctttcctctttcagagtcaaccctgaatttcaggatttttttctcttcgttgttccgaccatcctgtgaagtgtttcacg < 1:1544948‑M1/100‑99 (MQ=255) gcgaggtggcgtatattacgctttcctctttcagagtcaaccctgaatttcaggatttttttctcttcgttgttccgaccatcctgtgaagtgtttcacg > 2:814540‑M1/1‑2 (MQ=255) gcgaggtggcgtatattacgctttcctctttcagagtcaaccctgaatttcaggatttttttctcttcgttgttccaaccatcctgtgaagtgtttcacg < 2:1183980‑M1/100‑99 (MQ=255) cgaggtggcgtatattacgctttcctctttcagagtcaaccctgaatttcaggatttttttctcttcgttgttccgaccatcctgtgaagtgtttcacgt < 1:1696077‑M1/100‑100 (MQ=255) | GGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGT > NC_000913/223524‑223722 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |