| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 223623 | 12 (0.120) | 7 (0.080) | 5/168 | NT | 21.1% | intergenic (+215/‑148) | gmhB/rrsH | D,D‑heptose 1,7‑bisphosphate phosphatase/16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 3428937 = | 41 (0.450) | intergenic (‑175/‑299) | rrsD/yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein | |||||
GATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTT > NC_000913/3428880‑3429036 | ctgaaagaggaaagcgtaatatacgccacctcgcgacagtgcgctaaagcgcgtcgcGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTg > 1:1215376‑M2/58‑100 (MQ=255) aaagcgtaatatacgccacctcgcgacagtgagctgaaagccgcgtcgcGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAAATTCAg > 1:351084‑M2/50‑100 (MQ=255) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAtttttt < 2:1124993/100‑1 (MQ=11) tAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtc < 1:1330277/100‑1 (MQ=32) tAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtc < 1:304321/100‑1 (MQ=32) tAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtc < 1:2495477/100‑1 (MQ=32) aaaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtct < 2:1228128/100‑1 (MQ=32) aaaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtct < 1:990310/100‑1 (MQ=32) aaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtctc > 1:71176/1‑100 (MQ=35) aaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtctc > 1:1641707/1‑100 (MQ=35) agagCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtctc > 2:1695952/1‑99 (MQ=35) agagCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTctct < 1:2217066/100‑1 (MQ=35) ccacctcgcgacagtgagctgaaagccgcgtcgcGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTc > 1:2131265‑M2/35‑100 (MQ=255) agCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTc < 1:512469/100‑1 (MQ=38) gCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCg > 1:1642077/1‑100 (MQ=40) gCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCg < 1:687225/100‑1 (MQ=40) cacctcgcgacagtgagctgaaagccgcgtcgcGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCg > 1:1183991‑M2/34‑100 (MQ=255) cAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTTCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgt < 2:1365894/100‑1 (MQ=255) cAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgt < 2:2121249/100‑1 (MQ=40) cAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgt > 1:1547594/1‑100 (MQ=40) cctcgcgacagtgagctgaaagccgcgtcgcGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGgatttttctcttcaaccg > 1:1396276‑M2/32‑93 (MQ=255) tGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttgtt > 2:1345944/1‑100 (MQ=255) gcgacagtgagctgaaagccgcgtcgcGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTc > 1:2636886‑M2/28‑100 (MQ=255) gcgacagtgagctgaaagccgcgtcgcGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTc > 1:2633760‑M2/28‑100 (MQ=255) gCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTc > 1:571602/1‑100 (MQ=255) gCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTc < 2:1244773/100‑1 (MQ=255) cGATGCGGCTTTCAGCTCACTGTCGCGAGGTGGCTTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTcc < 2:2281238/100‑1 (MQ=255) cGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTcc < 2:1554977/100‑1 (MQ=255) gactcgattttCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCATGATTTTTTTCTCTTCgttgt < 2:1747903/88‑1 (MQ=14) gACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCg < 1:1210449/100‑1 (MQ=255) aCGCGTCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGa < 2:2029581/100‑1 (MQ=255) gcgGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGAcc < 1:542088/100‑1 (MQ=255) gcgGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGAcc < 1:901095/100‑1 (MQ=255) cgGCTTTCAGCTCACTGTCGCGAGGTAGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCa > 2:1304127/1‑100 (MQ=255) cTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATcc < 2:140037/100‑1 (MQ=255) cTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATcc > 1:300526/1‑100 (MQ=255) cTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATcc > 1:810327/1‑100 (MQ=255) ttCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTGCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTTTTCGTTGTTCCGACCATCCtg > 2:2455979/1‑100 (MQ=255) ttCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCtg > 1:2468368/1‑100 (MQ=255) cAGCTCACTGTCGCGATGTGGCATATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCtgtg < 2:1123836/100‑1 (MQ=255) cAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCtgtn < 2:948775/100‑2 (MQ=255) cAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCtgtg > 1:2337044/1‑100 (MQ=255) gCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGaa < 2:1287440/100‑1 (MQ=255) gCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGaa > 2:994720/1‑100 (MQ=255) gCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCAACCATCCTGTGaa > 1:582823/1‑100 (MQ=255) cTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGTATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAg < 2:1188669/100‑1 (MQ=255) cTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAg > 1:2307407/1‑100 (MQ=255) cTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAg < 1:2157782/100‑1 (MQ=255) tCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAgt > 1:1805781/1‑100 (MQ=255) tCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAg > 1:478013/1‑99 (MQ=255) cACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAgtg > 2:1205222/1‑100 (MQ=255) cACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAgtg > 2:758042/1‑100 (MQ=255) cACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACACTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAgtg > 2:119390/1‑100 (MQ=255) tGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAgtgtct > 2:1601904/1‑98 (MQ=255) gtcgcGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTc < 2:1641691‑M2/95‑1 (MQ=255) gtcgcGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTc > 1:2266393‑M2/6‑100 (MQ=255) gtcgcGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTc < 1:336405‑M2/95‑1 (MQ=255) gtcgcGAGGTGGCGTATATTACGCTTTCCTCTTTCAGACTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTTTTCCGACCATCCTGAGAAGTGATTc > 1:1746444‑M2/6‑100 (MQ=255) cgcGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCAc > 1:175467‑M2/4‑100 (MQ=255) cgcGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTACAGGATTTTTATATCTTCGTTGTTCCGACCATCCTGTGAAGtgtttaa > 1:1418873‑M2/4‑97 (MQ=255) gcGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACg > 2:814540‑M2/3‑100 (MQ=255) gcGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACg < 1:1544948‑M2/98‑1 (MQ=255) gcGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCAACCATCCTGTGAAGTGTTTCACg < 2:1183980‑M2/98‑1 (MQ=255) cGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGt < 1:1696077‑M2/99‑1 (MQ=255) gAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGtt < 1:186702/100‑1 (MQ=255) gAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGtt > 2:633981/1‑100 (MQ=255) | GATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTT > NC_000913/3428880‑3429036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |