New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	224957 =	NA (NA)	7 (0.080)	9/166	NT	NA	noncoding (1187/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
	?	NC_000913	224974 =	NA (NA)					noncoding (1204/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon

AGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCA  >  NC_000913/224875‑224989                                                                                                    |                aGCGCAACCCTTATCTTTTGTTGTCAGCGGTCTGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGtcatca                 <  1:461916/100‑1 (MQ=16) aGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGAAAAAAACTGAAAGAAGGAGGGGATGACGTCAAGtcatca                 >  1:523851/1‑100 (MQ=11)  gcgcAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTcatcat                >  1:312325/1‑100 (MQ=33)    gcAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATgg              >  1:31728/1‑100 (MQ=33)    gcAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATgg              >  2:477571/1‑100 (MQ=32)      aaCCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGcc            <  2:1008763/100‑1 (MQ=33)         ccTTATCTTTTGTTGCCAGCGGTCCGGTCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAATGTGGGGATGACGTCAAGTCATTATGGCCCtt         >  2:1143138/1‑100 (MQ=255)          cTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGTCAGTGATATACTGGAGGTAGGAGGGGATGACGTCAAGTCATCATGGCCCTTa        >  2:628582/1‑100 (MQ=11)            tATCTTTTGTTGCCAGCGGTCCGGCCGGGAATTCAAAGGTGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACg      <  1:2012596/100‑1 (MQ=12)            tATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACg      <  1:90751/100‑1 (MQ=33)              tCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGAc    <  1:1823190/100‑1 (MQ=32)               cTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGAcc   >  1:2310164/1‑100 (MQ=31)                ttttGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCa  >  2:830657/1‑100 (MQ=11)                                                                                                    |                AGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCA  >  NC_000913/224875‑224989

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.