| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4463021 | 169 (1.320) | 4 (0.030) | 4/166 | NT | 2.4% | intergenic (‑361/+33) | nrdD/treC | anaerobic ribonucleoside‑triphosphate reductase/trehalose‑6‑P hydrolase |
| ? | NC_000913 | = 4463035 | 171 (1.430) | intergenic (‑375/+19) | nrdD/treC | anaerobic ribonucleoside‑triphosphate reductase/trehalose‑6‑P hydrolase | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
GCAGAGCGTACGGATGACGGGCGCTACAGCGATATGTAAATTTTTTAATGAATTTGCTGGTTGAAAAATCAACAAAAACAACATACTGACAGACAAAACCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4462918‑4463021‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccggTAATG‑CCGGTCATT‑CCGGGGTTTTGTCTGTCAGTATGTTGTTTTTGTTGATTTTTCAACCAGCAAATTCATTAAAAAATTTACATATCGCTGTAGC < NC_000913/4463035‑4462940 GCAGAGCGTACGGATGACGGGCGCTACAGCGATATGTAAATTTTTTAATGAATTTGCTGGTTGAAAAATCAACAAAAACAACATACTGACAGACAAAACC < 1:697053/100‑1 AGAGCGTACGGATGACGGGCGCTACAGCGATATGTAAATTTTTTAATGAATTTGCTGGTTGAAAAATCAACAAAAACAACATACTGACAGACAAAACCCC < 1:1009835/100‑1 AGAGCGTACGGATGACGGGCGCTACAGCGATATGTAAATTTTTTAATGAATTTGCTGGTTGAAAAATCAACAAAAACAACATACTGACAGACAAAACCCC < 2:1433833/100‑1 AGCGTACGGATGACGGGCGCTACAGCGATATGTAAATTTTTTAATGAATTTGCTGGTTGAAAAATCAACAAAAACAACATACTGACAGACAAAACCCCGG < 2:2390679/100‑1 AGCGTACGGATGACGGGCGCTACAGCGATATGTAAATTTTTTAATGAATTTGCTGGTTGAAAAATCAACAAAAACAACATACTGACAGACAAAACCCCGG < 1:2896347/100‑1 TACAGCGATATGTAAATTTTTTAATGAATTTGCTGGTTGAAAAATCAACAAAAACAACATACTGACAGACAAAACCCCGGTAATG‑CCGGTCATT‑CCGGGG < 1:1517464/100‑1 TACAGCGATATGTAAATTTTTTAATGAATTTGCTGGTTGAAAAATCAACAAAAACAACATACTGACAGACAAAACCCCGGTAATG‑CCGGTCATT‑CCGGGG < 2:167092/100‑1 CGATATGTAAATTTTTTAATGAATTTGCTGGTTGAAAAATCAACAAAAACAACATCCTGACAGACAAAACCCCGGTAATG‑CCGGTCATT‑CCGGGGTTTTG < 1:286525/100‑1 CAGACAAAACCCCGG‑AATGACCGG‑CATTACCGGGGTTTTGTCTGTCAGTATGTTGTTTTTGTTGATTTTTCAACCAGCAAATTCATTAAAAAATTTACAT > 1:1031227/1‑100 AAACCCCGG‑AATGACCGG‑CATTACCGGGGTTTTGTCTGTCAGTATGTTGTTTTTGTTGATTTTTCAACCAGCAAATTCATTAAAAAATTTACATATCGCT > 1:664095/1‑100 AAACCCCGG‑AATGACCGG‑CATTACCGGGGTTTTGTCTGTCAGTATGTTGTTTTTGTTGATTTTTCAACCAGCAAATTCATTAAAAAATTTACATATCGCT > 2:838401/1‑100 CCCCGGTAATG‑CCGGTCATT‑CCGGGGTTTTGTCTGTCAGTATGTTGTTTTTGTTGATTTTTCAACCAGCAAATTCATTAAAAAATTTACATATCGCTGTA < 2:1294573/100‑1 CCCGGTAATG‑GCGGTCATT‑CCGGGGTTTTGTCTGTCAGTATGTTGTTTTTGTTGATTTTTCAACCAGCAAATTCATTAAAAAATTTACATATCGCTGTA < 1:1435554/99‑1 CCCGGTAATG‑CCGGTCATT‑CCGGGGTTTTGTCTGTCAGTATGTTGTTTTTGTTGATTTTTCAACCAGCAAATTCATTAAAAAATTTACATATCGCTGTAG > 2:1288151/1‑100 CCGGTAATG‑CCGGTCATT‑CCGGGGTTTTGTCTGTCAGTATGTTGTTTTTGTTGATTTTTCAACCAGCAAATTCATTAAAAAATTTACATATCGCTGTAGC > 2:1034259/1‑100 CGGTAATG‑CCGGTCATT‑CCGGGGTTTTGTCTGTCAGTATGTTGTTTTTGTTGATTTTTCAACCAGCAAATTCATTAAAAAATTTACATATCGCTGTAGC < 1:952262/99‑1 GTAATG‑CCGGTCATT‑CCGGGGTTTTGTCTGTCAGTATGTTGTTTTTGTTGATTTTTCAACCAGCAAATTCATTAAAAAATTTACATATCGCTGTAGC > 1:3001668/1‑97 GCAGAGCGTACGGATGACGGGCGCTACAGCGATATGTAAATTTTTTAATGAATTTGCTGGTTGAAAAATCAACAAAAACAACATACTGACAGACAAAACCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4462918‑4463021‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccggTAATG‑CCGGTCATT‑CCGGGGTTTTGTCTGTCAGTATGTTGTTTTTGTTGATTTTTCAACCAGCAAATTCATTAAAAAATTTACATATCGCTGTAGC < NC_000913/4463035‑4462940 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |