| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4638146 | 117 (0.910) | 6 (0.050) | 6/156 | NT | 5.2% | intergenic (+26/‑32) | creC/creD | sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein |
| ? | NC_000913 | = 4638170 | 116 (1.040) | intergenic (+50/‑8) | creC/creD | sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
TGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4638038‑4638146‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatagtcttcTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTCC < NC_000913/4638170‑4638072 TGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCAC < 1:3065505/100‑1 TTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCTTCACTTCACATAGCTTCAAATTCTTCCCACAT < 2:3282351/100‑1 TTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACAT < 2:1512225/100‑1 TTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACAT > 2:3207520/1‑100 TTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATA > 1:322938/1‑100 TAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAG < 2:1237680/100‑1 TAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAG > 1:1379572/1‑100 TAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAG > 2:1675819/1‑100 TAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAG > 2:165122/1‑100 AACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGT > 1:2629490/1‑100 CGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCT > 1:2252266/1‑100 CGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCT > 2:1854550/1‑100 GGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTT > 1:2277548/1‑100 GGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTA < 1:592571/100‑1 GCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTAT < 2:1229729/100‑1 GCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGG < 1:1093731/100‑1 GCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTT < 1:1230531/100‑1 CTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTG < 1:739958/100‑1 GCTTCAAATTCTTCCCACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTC < 2:803132/100‑1 ACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCAC < 1:721049/100‑1 ACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCAC > 2:216250/1‑100 ATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGC < 1:3310708/100‑1 TAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCC > 1:2153585/1‑100 TAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCC < 2:682462/100‑1 AGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCA < 1:2730119/100‑1 GTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATTTGAAGTGACGGTGAAGTCAAAGCGAGGCCAGCACACCAC > 2:2760121/1‑100 GTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCAC > 1:2555779/1‑100 GTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCAC > 2:2064802/1‑100 GTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCAC > 2:527116/1‑100 GTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCAC > 1:1809627/1‑100 CTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCT > 1:353384/1‑100 TTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTT > 2:3290446/1‑100 TCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTC > 2:2637040/1‑100 CTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTCC < 1:2839322/100‑1 CTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTCC < 1:2007856/100‑1 TGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4638038‑4638146‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatagtcttcTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTCC < NC_000913/4638170‑4638072 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |